View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5633_low_11 (Length: 402)

Name: NF5633_low_11
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5633_low_11
NF5633_low_11
[»] chr8 (4 HSPs)
chr8 (72-368)||(37056207-37056503)
chr8 (291-343)||(40175946-40175998)
chr8 (291-344)||(26018511-26018564)
chr8 (291-344)||(40694664-40694717)
[»] chr2 (3 HSPs)
chr2 (291-343)||(42251198-42251250)
chr2 (291-350)||(37810191-37810250)
chr2 (305-354)||(17383801-17383850)
[»] chr4 (2 HSPs)
chr4 (291-354)||(33414038-33414101)
chr4 (291-344)||(53127997-53128050)
[»] chr7 (5 HSPs)
chr7 (240-344)||(47497751-47497852)
chr7 (291-347)||(18089750-18089806)
chr7 (291-350)||(2276322-2276381)
chr7 (291-358)||(12275775-12275842)
chr7 (291-341)||(40134440-40134490)
[»] scaffold0137 (1 HSPs)
scaffold0137 (291-348)||(8228-8284)
[»] chr6 (1 HSPs)
chr6 (291-350)||(11650924-11650983)
[»] chr5 (4 HSPs)
chr5 (291-350)||(3907699-3907758)
chr5 (291-350)||(4190094-4190153)
chr5 (291-368)||(33029520-33029598)
chr5 (291-343)||(27195304-27195356)
[»] chr1 (1 HSPs)
chr1 (291-350)||(34437633-34437691)
[»] chr3 (2 HSPs)
chr3 (291-344)||(14345202-14345255)
chr3 (306-354)||(13540226-13540274)


Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 72 - 368
Target Start/End: Original strand, 37056207 - 37056503
Alignment:
Q  72 atgataaaactcctaatcaacaagtttaacactactgtattttaatgataggattcgaactcataacattacgcttagatccatattcaatggagaaaat 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37056207 atgataaaactcctaatcaacaagtttaacactactgtattttaatgataggattcgaactcataacattacgcttagatccatatttaatggagaaaat 37056306  T
Q  172 cttagatcatcaatgccctaacattatatatggttgtattgtattcgtataataaagaagaatgatatcaacacacatttaacacatattttttaaatat 271  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  37056307 cttagatcatcaatgccccaacattatatatggttgtattgtatttgtataatatagaagaatgatatcaatacacatttaacacatattttttaaatat 37056406  T
Q  272 tctctttgatgggttaaaataaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccatatgattttaacaaattaa 368  Q
    ||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37056407 tctttttgatgggttaaaataaaactcaaatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccatgtgattttaacaaattaa 37056503  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 40175998 - 40175946
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgg 343  Q
    ||||||||||||| |||||||||||||| ||||| || |||| ||||||||||    
T  40175998 taaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtgg 40175946  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 26018564 - 26018511
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtggg 344  Q
    ||||||||||||| |||||| ||||||| ||||| || |||| |||||||||||    
T  26018564 taaaattcacatgggtcccatcaaattatgtgggtcccatataaatttggtggg 26018511  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 40694717 - 40694664
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtggg 344  Q
    ||||||||||||| |||||||||||| | ||||| |||||||  ||||||||||    
T  40694717 taaaattcacatgggtcccaccaaatcatgtgggtcctatatagatttggtggg 40694664  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 42251198 - 42251250
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgg 343  Q
    |||||||| |||| |||||||||||||| ||||||||||||| ||||||||||    
T  42251198 taaaattcgcatgggtcccaccaaattatgtgggacctatataaatttggtgg 42251250  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 37810250 - 37810191
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccat 350  Q
    ||||||||||||| ||||||||||||||  |||| || |||| ||||||||||| |||||    
T  37810250 taaaattcacatgggtcccaccaaattagatgggtcccatataaatttggtgggtcccat 37810191  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 17383850 - 17383801
Alignment:
Q  305 gtcccaccaaattaagtgggacctatatgaatttggtgggacccatatga 354  Q
    |||||||||||||| ||||| || |||  |||||||||||||||||||||    
T  17383850 gtcccaccaaattatgtgggtcccatagaaatttggtgggacccatatga 17383801  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 33414038 - 33414101
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccatatga 354  Q
    |||||||||||||  ||||||||||| | ||||| ||||||| ||||||||||| |||||||||    
T  33414038 taaaattcacatggatcccaccaaatcacgtgggtcctatataaatttggtgggtcccatatga 33414101  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 53127997 - 53128050
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtggg 344  Q
    ||||| ||||||| ||||||||| || ||||||| ||||||| |||||||||||    
T  53127997 taaaactcacatgggtcccaccatatcaagtgggtcctatataaatttggtggg 53128050  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 344
Target Start/End: Complemental strand, 47497852 - 47497751
Alignment:
Q  240 caacacacatt-taacacatattttttaa-atattctctttgatgggttaaaataaaattcacatgagtcccaccaaattaagtgggacctatatgaatt 337  Q
    ||||||||||| ||||||| |||||| || ||||| |||||||| |||||||||     |||||||||||||||||||||| ||||| || |||  ||||    
T  47497852 caacacacattctaacacacatttttcaatatattttctttgattggttaaaat-----tcacatgagtcccaccaaattatgtgggtcccatacaaatt 47497758  T
Q  338 tggtggg 344  Q
    |||||||    
T  47497757 tggtggg 47497751  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 18089806 - 18089750
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacc 347  Q
    ||||||||||||| |||| ||||||||| |||| ||| |||| ||||||||||||||    
T  18089806 taaaattcacatgggtccaaccaaattatgtggaacccatataaatttggtgggacc 18089750  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 2276381 - 2276322
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccat 350  Q
    |||||||||||||| ||||||||||||| ||||| ||  ||| |||||||||||| ||||    
T  2276381 taaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtgggatccat 2276322  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 12275842 - 12275775
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccatatgatttt 358  Q
    ||||||||| ||| |||||||||||| | ||||| || |||| ||||||||||| ||||| |||||||    
T  12275842 taaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgatttt 12275775  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 40134490 - 40134440
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggt 341  Q
    ||||||||||||| |||||||||||||| ||||| || |||| ||||||||    
T  40134490 taaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggt 40134440  T

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Target: scaffold0137 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 8284 - 8228
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggaccc 348  Q
    |||||||||||||| ||||||||||||| |||||||| | ||| ||||||||||||||    
T  8284 taaaattcacatgaatcccaccaaattatgtgggacccacatg-atttggtgggaccc 8228  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 11650924 - 11650983
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccat 350  Q
    |||||||||||||  ||||||||||||| ||||| || |||| ||||||||||| |||||    
T  11650924 taaaattcacatggatcccaccaaattatgtgggtcccatataaatttggtgggtcccat 11650983  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 3907758 - 3907699
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccat 350  Q
    ||||||||||||| |||||||||||| | ||||| || |||| ||||||||||| |||||    
T  3907758 taaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccat 3907699  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 4190094 - 4190153
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccat 350  Q
    |||||||||||||  ||||| ||||||| ||||| ||||| ||||||||||||| |||||    
T  4190094 taaaattcacatggatcccaacaaattacgtgggtcctatgtgaatttggtgggtcccat 4190153  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 33029598 - 33029520
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccatatg-attttaacaaattaa 368  Q
    ||||| ||||||||||||||||||||||  || |||  |||| |||||||||||||  ||||| |||||||| ||||||    
T  33029598 taaaactcacatgagtcccaccaaattagatgtgactcatataaatttggtgggacttatatgaattttaactaattaa 33029520  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 27195356 - 27195304
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgg 343  Q
    ||||||||||||||||||||| |||| | || ||||| |||| ||||||||||    
T  27195356 taaaattcacatgagtcccacaaaatcatgtcggacccatataaatttggtgg 27195304  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 34437633 - 34437691
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtgggacccat 350  Q
    ||||||||||||| |||||||||||| | |||||||| |||| ||||||| |||||||||    
T  34437633 taaaattcacatgggtcccaccaaatcatgtgggacccatat-aatttggggggacccat 34437691  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 14345255 - 14345202
Alignment:
Q  291 taaaattcacatgagtcccaccaaattaagtgggacctatatgaatttggtggg 344  Q
    |||||||||||||| ||||||||||| | ||||| || |||| |||||||||||    
T  14345255 taaaattcacatgaatcccaccaaatcatgtgggtcccatataaatttggtggg 14345202  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 13540226 - 13540274
Alignment:
Q  306 tcccaccaaattaagtgggacctatatgaatttggtgggacccatatga 354  Q
    ||||||||||| | ||| ||||||||| |||||||||||||| ||||||    
T  13540226 tcccaccaaatcatgtgagacctatataaatttggtgggacctatatga 13540274  T

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