View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_12 (Length: 400)
Name: NF5633_low_12
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 3381747 - 3381373
Alignment:
| Q |
9 |
gaagaatatggcaatagttgtcttggcctccatgaatctgttgtgcaggaaaaatctcttaagaaacctctcttcaaattcataccaatttgaattgact |
108 |
Q |
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| T |
3381747 |
gaagaatatggcaatagttgtcttggcctccatgaatctgttgtgcaggaaaaatctcttaagaaacctctcttcaaattcataccaatttgaattgact |
3381648 |
T |
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| Q |
109 |
tgtgttggtttattcaagtaccgctctattgctttcccgattaatgaatgagggaacaatatcgtaaacacaatctcctcttcttcttcttatttggtgt |
208 |
Q |
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| T |
3381647 |
tgagttggtttattcaagtaccgctctattgctttcccgattaatgaatgagggaacaatatcgtaaacacaatctcctcttcttcttcttatttggtgt |
3381548 |
T |
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| Q |
209 |
tgcaagtgtatcaacaagttcatatattcttgtccgatgagtttaaagatcttcatgatctaatcctacaaaagggttaacaaataaaatttgtagaact |
308 |
Q |
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| T |
3381547 |
tgcaagtgtatcaacaagttcatatattcttgtccgatgagtttaaagatcttcatgatctaatcctacaaaagggttaacaaataaaatttgtagaact |
3381448 |
T |
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| Q |
309 |
cccatcttcatgagtatgtgtggtattcctaagaggtttcagtatatgacataatcgtttgggattcctgtatca |
383 |
Q |
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| T |
3381447 |
cccatcttcatgagtatgtgtggtattcctaagaggtttcagtatatgacataatcgtttgggattcctgtatca |
3381373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 1489079 - 1488840
Alignment:
| Q |
13 |
aatatggcaatagttgtcttggcctccatgaatctgttgtgcaggaaaaatctcttaagaaacctctcttcaaattcataccaatttgaattga-cttgt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||| | ||| |
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| T |
1489079 |
aatatggcaatagttgtcttggcctccatgaatctgttgtgcgggaaaaatttcttaagaaatctctcttaaaattcataccaatttgaattgaccatgt |
1488980 |
T |
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| Q |
112 |
gttggtttattcaagtaccgctctattgctttcccgattaatgaatg-agggaacaatatcgtaaacacaatctcc---------tcttcttcttcttat |
201 |
Q |
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|||||||||| |||||||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| ||| | |
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| T |
1488979 |
gttggtttatctaagtaccgctttgttgctttcccgattaatgaatgaaggcaacaatatcgtaaacacaatctcctcctcctcttcttcttctccttct |
1488880 |
T |
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| Q |
202 |
ttggtgttgcaagtgtatcaacaagttcatatattcttgt |
241 |
Q |
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|||||||||||| |||| |||||||||||||||||||||| |
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| T |
1488879 |
ttggtgttgcaattgtaccaacaagttcatatattcttgt |
1488840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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