View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5633_low_13 (Length: 366)

Name: NF5633_low_13
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5633_low_13
NF5633_low_13
[»] chr2 (3 HSPs)
chr2 (18-366)||(6680667-6681015)
chr2 (140-312)||(6675491-6675666)
chr2 (102-301)||(6664564-6664763)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 6680667 - 6681015
Alignment:
Q  18 caaactttggggcattaaagctgcgtactatacaacatggttggtgtcttttggaatacatgtcacatgatgttagtaagccttttctttggaacccaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6680667 caaactttggggcattaaagctgcgtactatacaacatggttggtgtcttttggaatacatgtcacatgatgttagtaagccttttctttggaacccaca 6680766  T
Q  118 taactccaagaaaatcaagctcccaccccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctacaaatgatgaaacatgc 217  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6680767 taactccaagaaaatcaatctcccactccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctacaaatgatgaaacatgc 6680866  T
Q  218 tcaatttatttattttcatcacatagcctttgaatgttctactaccaacttggagataagcaatggactaaagtgtgcttttataatgaaattgttaggc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6680867 tcaatttatttattttcatcacatagcctttgaatgttctactaccaacttggagataagcaatggactaaagtgtgcttttataatgaaattgttaggc 6680966  T
Q  318 tgcgtccattccattttcacccttttgatgaaagaactaggagagcctc 366  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6680967 tgcgtccattccattttcacccttttgatgaaaggactaggagagcctc 6681015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 140 - 312
Target Start/End: Original strand, 6675491 - 6675666
Alignment:
Q  140 ccaccccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctacaaatgatgaaacatgctcaatttatttattttcatcac 239  Q
    |||||||||||||||||||| ||||  ||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  6675491 ccaccccttaaacacaatggcactatttttggtaattgcattttgtcatcccctccaactacaaatgatgaaacatgctccatttatttattttcatcac 6675590  T
Q  240 atagcctttgaatgttctactaccaacttggagataagcaatggac---taaagtgtgcttttataatgaaattgt 312  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||    
T  6675591 atagcctttcaatgttctactaccaacttggagataagcaatggacttataaagtgtgcctttataatgaaattgt 6675666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 102 - 301
Target Start/End: Complemental strand, 6664763 - 6664564
Alignment:
Q  102 ttctttggaacccacataactccaagaaaatcaagctcccaccccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctac 201  Q
    ||||||||||||||| ||||   |||||||||| ||| |||||||||||||||||||| |||   ||||| |||||||||||||||||||||||| |||     
T  6664763 ttctttggaacccacttaaccataagaaaatcatgcttccaccccttaaacacaatggcactccttttggtaattgcattttgacatcccctccaactag 6664664  T
Q  202 aaatgatgaaacatgctcaatttatttattttcatcacatagcctttgaatgttctactaccaacttggagataagcaatggactaaagtgtgcttttat 301  Q
    ||||||||||| ||| || |||||||||||||  |||| | ||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6664663 aaatgatgaaatatgttccatttatttattttgctcacgttgcccttcaatattctactaccaacttggagataagcaatgtactaaagtgtgcttttat 6664564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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