View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5633_low_16 (Length: 322)
Name: NF5633_low_16
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 2436403 - 2436106
Alignment:
| Q |
10 |
aaaaatatgaggatcaaaattatatttaagtatatcttaaaatattaattaagaagataattacaatcaacagagtagacgaagaggtttccaaaggcca |
109 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| | || ||||||||||||||||| || |
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| T |
2436403 |
aaaaatatgaggatcaaaactatatttaagtatatcgtaaaatattaa----gaagataattacaatcaacagattggatgaagaggtttccaaaggtca |
2436308 |
T |
|
| Q |
110 |
tccaaagattgcttcatacgcaagtaactcaacacaaaaaacttgaaagagnnnnnnngcacaaac-----attaaccaaagcatatgcattcattcatg |
204 |
Q |
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|||||||| |||| ||||| ||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
2436307 |
tccaaagaatgctccatacacaagtaactcaactcaaaaaacttgaaagaaagaaagaataaaaagcacatattaaccaaagcatatgcattcattcatg |
2436208 |
T |
|
| Q |
205 |
agcaacaagaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtcttcaacatac |
304 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2436207 |
agcaacagcaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtcttccacatac |
2436108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 118 - 306
Target Start/End: Complemental strand, 2432933 - 2432745
Alignment:
| Q |
118 |
ttgcttcatacgcaagtaactcaacacaaaaaacttgaaagagnnnnnnngcacaaacattaaccaaagcatatgcattcattcatgagcaacaagaacc |
217 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
2432933 |
ttgcttcatacacaagtaacacaactcaaaaaacttgaaagaaagaaaaggcacaaacattaaagaaagcatctgcattcattcatgagcaacaacaacc |
2432834 |
T |
|
| Q |
218 |
acttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtcttcaacatacac |
306 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2432833 |
acttgtttaccaacattgcgaccactgtataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtcttccacatacac |
2432745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 2496574 - 2496676
Alignment:
| Q |
204 |
gagcaacaagaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtcttcaacata |
303 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
2496574 |
gagcaacgacaaccacttgtttaccaacattgcgaccactatataggccaatcaaggctgcagggccattctcaagaccctcagttatgtcttcaacata |
2496673 |
T |
|
| Q |
304 |
cac |
306 |
Q |
| |
|
||| |
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|
| T |
2496674 |
cac |
2496676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 2516141 - 2516249
Alignment:
| Q |
198 |
attcatgagcaacaagaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtcttc |
297 |
Q |
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|
||||| ||||||||| ||||||||||||||||||||||||||| ||| | | ||||| ||| || |||||||| |||||||||||||||||||||||||| |
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| T |
2516141 |
attcacgagcaacaacaaccacttgtttaccaacattgcgaccgctaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttc |
2516240 |
T |
|
| Q |
298 |
aacatacac |
306 |
Q |
| |
|
|||||||| |
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|
| T |
2516241 |
cacatacac |
2516249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 195 - 306
Target Start/End: Complemental strand, 2429874 - 2429763
Alignment:
| Q |
195 |
ttcattcatgagcaacaagaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtc |
294 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||| |||||||| | || |||| ||| || ||||| |||||||||||||||||||||||||| |
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| T |
2429874 |
ttcactcatgagcaacaacaaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtc |
2429775 |
T |
|
| Q |
295 |
ttcaacatacac |
306 |
Q |
| |
|
||| |||||||| |
|
|
| T |
2429774 |
ttccacatacac |
2429763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 2511855 - 2511978
Alignment:
| Q |
183 |
aaagcatatgcattcattcatgagcaacaagaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagacc |
282 |
Q |
| |
|
||||||| |||||||||||| ||||||||| || ||||||||| |||||||| ||||||| ||| ||||| ||| || |||||||| ||||||||||| |
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|
| T |
2511855 |
aaagcatctgcattcattcacgagcaacaacaagcacttgtttgccaacatttttaccactaaatatgccaaccaaagctgcaggacctttctcaagacc |
2511954 |
T |
|
| Q |
283 |
ctcagctatgtcttcaacatacac |
306 |
Q |
| |
|
||||||||||||||| |||||||| |
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|
| T |
2511955 |
ctcagctatgtcttccacatacac |
2511978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 2430066 - 2429939
Alignment:
| Q |
19 |
aggatcaaaattatatttaagtatatcttaaaatattaattaagaagataattacaatcaacagagtagacgaagaggtttccaaaggccatccaaagat |
118 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||| || ||||||| | |||||| | ||||||| |
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|
| T |
2430066 |
aggatcaaaactatatttaagtctatcataaaatgttaattaagaagat-attacaatcaacagagtggatgaagaggctcgcaaaggtcctccaaaggg |
2429968 |
T |
|
| Q |
119 |
tgcttcatacgcaagtaactcaacacaaa |
147 |
Q |
| |
|
|||| ||| | ||||||||| |||||||| |
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|
| T |
2429967 |
tgctccatgcacaagtaactaaacacaaa |
2429939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 2505234 - 2505357
Alignment:
| Q |
183 |
aaagcatatgcattcattcatgagcaacaagaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagacc |
282 |
Q |
| |
|
||||||| ||||||||||| ||||||||| || ||||||||| |||||||| |||||| ||| ||||| ||| || |||| || ||||||||||| |
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|
| T |
2505234 |
aaagcatcggcattcattcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatatgccaaccaaggcttcagggcctttctcaagacc |
2505333 |
T |
|
| Q |
283 |
ctcagctatgtcttcaacatacac |
306 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
2505334 |
ctcagctatgtcttctacatacac |
2505357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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