View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_18 (Length: 313)
Name: NF5633_low_18
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_18 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0115 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 134 - 313
Target Start/End: Original strand, 40894564 - 40894743
Alignment:
| Q |
134 |
agttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagtttgagttgtgttggagaagaagaaggaattagaggtgttggagaag |
233 |
Q |
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|||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
40894564 |
agttatctgtataaatatgaaaaattctgggtagagatattggagaatatgagtttgagttgttttggagaagaagaagaaattagaggtgttggagaag |
40894663 |
T |
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| Q |
234 |
atgaaggtagtaacataattatggtcattttggtccctctcgcctacatggacatccatcaatttagtcatttgcctacg |
313 |
Q |
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| T |
40894664 |
atgaaggtagtaacataattatggtcattttggtccctctcgcctacatggacatccatcaatttagtcatttgcctacg |
40894743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 272
Target Start/End: Original strand, 31621831 - 31621970
Alignment:
| Q |
135 |
gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggagaa |
232 |
Q |
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||||| ||||| |||||||||||||||||| | |||||||||| || ||| |||| ||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
31621831 |
gttatttgtatgaatatgaaaaattatgggcagagatgttggacaaaatgtgtttatgagttgtgttggagaagaagaagtaattggaggtgttggagaa |
31621930 |
T |
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| Q |
233 |
gatgaaggtagtaacataattatggtcattttggtccctc |
272 |
Q |
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||||||| | ||||||||| |||||||||||||||||| |
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| T |
31621931 |
gatgaagacaagaacataattctggtcattttggtccctc |
31621970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 272
Target Start/End: Original strand, 36668882 - 36669020
Alignment:
| Q |
136 |
ttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggagaag |
233 |
Q |
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|||| ||||| |||||||||||||||||| | | |||||||| | |||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
36668882 |
ttatttgtatgaatatgaaaaattatgggcagaaatgttggacagaatgagtttatgagttgtgttggagaagaagaagtaattggaggtgttggagaag |
36668981 |
T |
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| Q |
234 |
atgaaggtagtaacataattatggtcattttggtccctc |
272 |
Q |
| |
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|||||| | ||||||||| |||||||||||||||||| |
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| T |
36668982 |
atgaagacaagaacataattctggtcattttggtccctc |
36669020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 40894443 - 40894479
Alignment:
| Q |
13 |
gagatgaagatgtaaataaagatgataaatcaattca |
49 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
40894443 |
gagatgaagatgaaaataaagatgataaatcaattca |
40894479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 134 - 302
Target Start/End: Original strand, 37464683 - 37464850
Alignment:
| Q |
134 |
agttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggaga |
231 |
Q |
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|||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| |||||||| ||| |||||||||| |
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| T |
37464683 |
agttatctctatgaatatgaaaaattctgggtagagatgttggagaatatgagtttatgagttgtgttggagaa---gaaggaatgagatgtgttggaga |
37464779 |
T |
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| Q |
232 |
agatgaaggtagtaacataattatggtcattttggtccctctcgcctacatggacatccatcaatttagtc |
302 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37464780 |
agatgaagacagtaacataattatggtcagtttggtccctctcgcctacatggacatccatcaatttagtc |
37464850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 19802030 - 19801947
Alignment:
| Q |
189 |
tgagttgtgttggagaagaagaaggaattagaggtgttggagaagatgaaggtagtaacataattatggtcattttggtccctc |
272 |
Q |
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||||| ||| ||||||||| ||||||||| | || ||| ||||| |||||| || ||||||||| |||||||||||||||||| |
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| T |
19802030 |
tgagtagtgatggagaagatgaaggaattgggggcattgaagaagttgaaggcagaaacataattgtggtcattttggtccctc |
19801947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 4671 - 4532
Alignment:
| Q |
135 |
gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagtttg--agttgtgttggagaagaagaaggaattagaggtgttggagaa |
232 |
Q |
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||||| ||||| |||||||||| ||||||| |||||||||||| || ||||||||| ||||||||||||||||||||||||||| || || |||||||| |
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| T |
4671 |
gttatttgtatgaatatgaaaatttatgggcaaagatgttggacaaaatgagtttgttagttgtgttggagaagaagaaggaattggaagttttggagaa |
4572 |
T |
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| Q |
233 |
gatgaaggtagtaacataattatggtcattttggtccctc |
272 |
Q |
| |
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|||||||| | ||||||||| || ||||||||||||||| |
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| T |
4571 |
gatgaaggcatgaacataattctgatcattttggtccctc |
4532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 12411 - 12272
Alignment:
| Q |
135 |
gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagtttg--agttgtgttggagaagaagaaggaattagaggtgttggagaa |
232 |
Q |
| |
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||||| ||||| |||||||||| ||||||| |||||||||||| || ||||||||| ||||||||||||||||||||||||||| || || |||||||| |
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| T |
12411 |
gttatttgtatgaatatgaaaatttatgggcaaagatgttggacaaaatgagtttgttagttgtgttggagaagaagaaggaattggaagttttggagaa |
12312 |
T |
|
| Q |
233 |
gatgaaggtagtaacataattatggtcattttggtccctc |
272 |
Q |
| |
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|||||||| | ||||||||| || ||||||||||||||| |
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| T |
12311 |
gatgaaggcatgaacataattctgatcattttggtccctc |
12272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 271
Target Start/End: Complemental strand, 16728147 - 16728009
Alignment:
| Q |
135 |
gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggagaa |
232 |
Q |
| |
|
||||| ||||| ||||||||||||| | || | |||||||||| || |||||||| ||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
16728147 |
gttatttgtatgaatatgaaaaattctaggcagagatgttggacaaaatgagtttatgagttgtgttggagaagaagaagtaattggaggtgttggagaa |
16728048 |
T |
|
| Q |
233 |
gatgaaggtagtaacataattatggtcattttggtccct |
271 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||||||| |
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| T |
16728047 |
gatgaagacaagaacataattctggtcattttggtccct |
16728009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 269
Target Start/End: Complemental strand, 49917722 - 49917586
Alignment:
| Q |
135 |
gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggagaa |
232 |
Q |
| |
|
||||| ||||| |||||||||| || |||| | |||||||||| || |||||||| |||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
49917722 |
gttatttgtatgaatatgaaaatttctgggcagagatgttggataaaatgagtttatgagttgtgttggagaagaagaaggaattggaggtgtttgagaa |
49917623 |
T |
|
| Q |
233 |
gatgaaggtagtaacataattatggtcattttggtcc |
269 |
Q |
| |
|
|||| ||| | ||||||||| ||||||||||||||| |
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|
| T |
49917622 |
gatggaggcaagaacataattctggtcattttggtcc |
49917586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 134 - 272
Target Start/End: Complemental strand, 26529843 - 26529703
Alignment:
| Q |
134 |
agttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggaga |
231 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| | |||||||||| | |||||||| ||||||| ||||||||||||||| |||| ||||||||||||| |
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|
| T |
26529843 |
agttatttgtatgaatatgaaaaattatggacatagatgttggacagaatgagtttatgagttgttttggagaagaagaagtaattggaggtgttggaga |
26529744 |
T |
|
| Q |
232 |
agatgaaggtagtaacataattatggtcattttggtccctc |
272 |
Q |
| |
|
||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
26529743 |
tgatgaagacaagaacataattctggtcattttggtccctc |
26529703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 36574297 - 36574158
Alignment:
| Q |
135 |
gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggagaa |
232 |
Q |
| |
|
||||| ||||| ||||||||||||| |||| | |||||||| | || |||||||| |||||||||||||||||| |||| |||| |||||||||||||| |
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|
| T |
36574297 |
gttatttgtatgaatatgaaaaattctgggcagagatgttgtacaaaatgagtttatgagttgtgttggagaagatgaagtaattggaggtgttggagaa |
36574198 |
T |
|
| Q |
233 |
gatgaaggtagtaacataattatggtcattttggtccctc |
272 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
36574197 |
gatgaaaacaagaacataattttggtcattttggtccctc |
36574158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 17332769 - 17332879
Alignment:
| Q |
189 |
tgagttgtgttggagaagaagaaggaattagaggtgttggagaagatgaaggtagtaacataattatggtcattttggtccctctcgcctacatggacat |
288 |
Q |
| |
|
||||| ||||||||||||| | ||||| |||||||||||||||| ||||| |||| |||||| |||| |||||||||| ||||||||||| |||| |
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|
| T |
17332769 |
tgagtagtgttggagaagataatagaattggaggtgttggagaagaagaaggccgtaa-ataattgtggtaattttggtcc--ctcgcctacattgacac |
17332865 |
T |
|
| Q |
289 |
ccatcaatttagtc |
302 |
Q |
| |
|
| | |||||||||| |
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|
| T |
17332866 |
caaacaatttagtc |
17332879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 8479989 - 8479848
Alignment:
| Q |
135 |
gttatctgtataaatatgaaaaattat-gggtaaagatgttggagaata-tgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggag |
230 |
Q |
| |
|
||||| ||||| |||||||||| || | ||| |||||||||||| || | ||||||| |||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
8479989 |
gttatttgtatgaatatgaaaattttttgggcaaagatgttggacaaaaatgagtttctgagttgtgttggagaagaagaaggaattggaagtgttggag |
8479890 |
T |
|
| Q |
231 |
aagatgaaggtagtaacataattatggtcattttggtccctc |
272 |
Q |
| |
|
|||||||||| || ||||||||| || ||||||||||||||| |
|
|
| T |
8479889 |
aagatgaaggcaggaacataattctgatcattttggtccctc |
8479848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 31409614 - 31409538
Alignment:
| Q |
195 |
gtgttggagaagaagaaggaattagaggtgttggagaagatgaaggtagtaacataattatggtcattttggtccctc |
272 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||| |||||||||||| || ||||||||| ||||||||||| |||||| |
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|
| T |
31409614 |
gtgttggagaagatgaaggaattggaggcattgaagaagatgaaggcag-aacataattgtggtcattttgatccctc |
31409538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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