View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_19 (Length: 298)
Name: NF5633_low_19
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 31570179 - 31570376
Alignment:
| Q |
1 |
tgtttttatcagagaccaccacacccaaagttcttgtatctcgaatatgttggaattgtgagaaatgaactaaagcttgagccagttcagaggatcatga |
100 |
Q |
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| T |
31570179 |
tgtttttatcagagaccaccacacccaaagttcttgtatctcgaatatgttggaattgtgagaaatgaactaaagcttgagccagttcagaggatcatga |
31570278 |
T |
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| Q |
101 |
ttaaagaagaaaaatagtagagatgaagtccaaaggaattgattccaaatattttttgaggtcgtacagtcacgaatatacaatgaagaagattaaag |
198 |
Q |
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| T |
31570279 |
ttaaagaagaaaaatagtagagatgaagtccaaaggaattgattccaaatattttttgaggtcgtacagtcacgaatatacaatgaagaagattaaag |
31570376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 31570416 - 31570458
Alignment:
| Q |
238 |
aaaactatcatttacacacatgtcaaaaattaaatgaagacat |
280 |
Q |
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| T |
31570416 |
aaaactatcatttacacacatgtcaaaaattaaatgaagacat |
31570458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1928051 - 1928247
Alignment:
| Q |
1 |
tgtttttatcagagaccaccacacccaaagttcttgtatctcgaatatgttggaattgtgagaaatgaactaaagcttgagccagttcagaggatcatga |
100 |
Q |
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|||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1928051 |
tgtttttatcagagacca---cacccaaagttcctgtatctcaaatatgttggaattgtgagaaatgaactaaagcttgagccagttcagaggatcatga |
1928147 |
T |
|
| Q |
101 |
ttaaag---aagaaaaatagtagagatgaagtccaaaggaattgattccaaatattttttgaggtcgtacagtcacgaatatacaatgaagaagattaaa |
197 |
Q |
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|||||| || ||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1928148 |
ttaaagaaaaaaaaaaacagtagagatgaagtcc-aaggaattaattccaaatattttttgaggtcgtacagtcacgaatatacaatgaagaagaataaa |
1928246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 1928292 - 1928333
Alignment:
| Q |
238 |
aaaactatcatttacacacatgtcaaaaattaaatgaagaca |
279 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1928292 |
aaaattatcatttacacacatgtcaaaaattaaatgaagaca |
1928333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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