View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_2 (Length: 586)
Name: NF5633_low_2
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 21 - 576
Target Start/End: Complemental strand, 16963546 - 16962989
Alignment:
| Q |
21 |
atttccttcatttctgttctctcttcctttgattcagaagctaaacttggcttcaaatcaatttaatggttcattttctatgaatatgtcttgtggttct |
120 |
Q |
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| T |
16963546 |
atttccttcatttctgttctctcttcctttgattcagaagctaaacttggcttcaaatcaatttaatggttcattttctatgaatatatcttgtggttct |
16963447 |
T |
|
| Q |
121 |
tctctaacatttgttgatatctcaaacaattctctggaaggaaaattgccatcatgcatcgattcgacgttgtcggttaatcgaacaatagtttattctg |
220 |
Q |
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| T |
16963446 |
tctctaacatttgttgatatctcaaacaattctctagaaggaaaattgccatcatgcattgattcgacattgtcgttgaatcgaacaatagtttattctg |
16963347 |
T |
|
| Q |
221 |
gtaattgtttatcagcaagaaatgtcagtgatcaacattcatcttcacagtgcaagaattcaacggtgttagccgctaagccgagatttgagaagccgaa |
320 |
Q |
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| T |
16963346 |
gtaattgtttatcagcaagaaatgtcagtgatcaacattcatcttcacattgcaagaattcaacggtgttagccgctaagccgagatttgagaagccgaa |
16963247 |
T |
|
| Q |
321 |
aaaatcaatgatgcagctaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctactctttctgttcattttgagaaag |
420 |
Q |
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| T |
16963246 |
aaaatcaatgatgcagctaggagtattatttggtattattggaggttttgttggaattgtagggcttttgattctactctttctgttcattttgagaaag |
16963147 |
T |
|
| Q |
421 |
tctaaagcagaaagagaagatagatctgttgatatttcaagagaatcaagactaaatatttatgcaagtaaggccataattacatacatataaacatttc |
520 |
Q |
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| T |
16963146 |
tccaaagcagaaagagaagatagatctgttgatatttcaagagaatcaagactaaatatttatgcaagtaaggccataattacatacacataaacatttc |
16963047 |
T |
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| Q |
521 |
ata--ctagtgcacaagttaaatttagatcatatttttcatttcatattagtcctttg |
576 |
Q |
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| T |
16963046 |
atattgtagtgcacaagttaaatttagatcatatttttcatttcatattagtcctttg |
16962989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 21 - 501
Target Start/End: Complemental strand, 16216291 - 16215792
Alignment:
| Q |
21 |
atttccttcatttctgttctctcttcctttgattcagaagctaaacttggcttcaaatcaatttaatggttcattttctatgaatatgtcttgtggttct |
120 |
Q |
| |
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||||||||||||| || |||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16216291 |
atttccttcatttttgatctctcttcctttgatacagaacctaaacctggcttcaaatcaatttaatggttcattttctatgaatatatcttgtggttct |
16216192 |
T |
|
| Q |
121 |
tctctaacatttgttgatatctcaaacaattctctggaaggaaaattgccatcatgcatc----gattcgacgttgtcggttaatcgaacaatagtttat |
216 |
Q |
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| T |
16216191 |
tctctaacatttgttgatatctcaaacaattctctagaaggaaaattgccatcatgcattaattgattcgacgttgtcggttaatcgaacaatagtttat |
16216092 |
T |
|
| Q |
217 |
tctggtaattgtttatcagcaagaaatgtcagtgatcaacattcatcttcacagtgcaagaattcaacggtgttagccgctaagccgagatttgagaagc |
316 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| |||| |
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| T |
16216091 |
tctggtaattgtttgtcagcaagaaatatcagtgatcaacattcatcttcacattgcaagaattcaacagtgttagccgctgagacgagatttgataagc |
16215992 |
T |
|
| Q |
317 |
cgaaaaaatcaatgatgcagctaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctactctttctgttcattttgag |
416 |
Q |
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| T |
16215991 |
cgaaaaaatcaatgatgcaactaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctactctttctgttcattttgag |
16215892 |
T |
|
| Q |
417 |
aaagtctaaagcagaaagagaag---------------atagatctgttgatatttcaagagaatcaagactaaatatttatgcaagtaaggccataatt |
501 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
16215891 |
aaagtctaaagcagaaagagaagatagtaaaatagatcatagatctgttgatatttcaagagaatcaagaccaaatatttatgcaagtaaggccacaatt |
16215792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 199 - 422
Target Start/End: Complemental strand, 48892257 - 48892031
Alignment:
| Q |
199 |
aatcgaacaatagtttattctggtaattgtt---tatcagcaagaaatgtcagtgatcaacattcatcttcacagtgcaagaattcaacggtgttagccg |
295 |
Q |
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||||||| ||||||||||||||| ||||||| | ||| | |||| | |||||||||||||| |||||||| | |||||||| | |||| ||| || |
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| T |
48892257 |
aatcgaaaaatagtttattctggcaattgttgtttgtcaactagaagtttcagtgatcaacatccatcttcatattgcaagaaattgacggccttatcca |
48892158 |
T |
|
| Q |
296 |
ctaagccgagatttgagaagccgaaaaaatcaatgatgcagctaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattct |
395 |
Q |
| |
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|||| |||||||||||| | | |||||| | ||| |||||| || || ||| || ||||||||||||||| | ||||| ||||||||||||| | |
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| T |
48892157 |
ctaatccgagatttgagggtaagtaggaatcaaaggagcaactaggactaatacttgatactattggaggttttgtaggaattgcagggcttttgattat |
48892058 |
T |
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| Q |
396 |
actctttctgttcattttgagaaagtc |
422 |
Q |
| |
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| | ||||||||||||||||||||||| |
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| T |
48892057 |
attttttctgttcattttgagaaagtc |
48892031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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