View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_22 (Length: 251)
Name: NF5633_low_22
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 21316217 - 21316082
Alignment:
| Q |
101 |
acacgaattggagagttttagccatatattatgtctttgcatgtaataaatagaatatgatttattcattttatagtgtataaagctcatgttaaaaaca |
200 |
Q |
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| T |
21316217 |
acacgaattggagagttctagccatatattatgtctttgcatgtaataaatagaatatgatttattcattttatagtgtataaagctcatgttaaaaaca |
21316118 |
T |
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| Q |
201 |
attaaatatttttagtagatcatgtgttgtgtatgt |
236 |
Q |
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| T |
21316117 |
attaaatatttttagtagatcatgtgttgtgtatgt |
21316082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 21319456 - 21319365
Alignment:
| Q |
101 |
acacgaattggagagttttagccatatatt-atgtctttgcatgtaataaatagaatatgatttattcattttatagtgtataaagctcatg |
191 |
Q |
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| T |
21319456 |
acacgaattggagagttttagccatttatttatgtctttgcgtgtaacaaatagaatataatttattcattttatagtgtataaagctcatg |
21319365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 29705279 - 29705357
Alignment:
| Q |
141 |
atgtaataaatagaatatgatttattcattttatagtgtataaagctcatgt-----taaaaacaattaaatattttta |
214 |
Q |
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| T |
29705279 |
atgtaataaatagaatatgatttgattattttatagtgtacaaagagcatgttgcactgaaaacaattaaatattttta |
29705357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 4734978 - 4735022
Alignment:
| Q |
148 |
aaatagaatatgatttattcattttatagtgtataaagctcatgt |
192 |
Q |
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| T |
4734978 |
aaatagaatatgatttagtcaatttatagtgtattaaggtcatgt |
4735022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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