View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_28 (Length: 234)
Name: NF5633_low_28
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_28 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 27436816 - 27437039
Alignment:
| Q |
11 |
taatactctaaacaatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagttgcaataaacgcggtat |
110 |
Q |
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| T |
27436816 |
taatactctaaacaatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagctgcaataaacgcggtat |
27436915 |
T |
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| Q |
111 |
acatgcagacatacttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgcttgtggggtatggttctggagctggagc |
210 |
Q |
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| T |
27436916 |
acatgcagacatacgtgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgcttgtggggtatggttctggagctggagc |
27437015 |
T |
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| Q |
211 |
tgatatgaaggagaaggagaagcc |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
27437016 |
tgatatgaaggagaaggagaagcc |
27437039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 27945308 - 27945531
Alignment:
| Q |
11 |
taatactctaaacaatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagttgcaataaacgcggtat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27945308 |
taatactctaaacaatttgaattgtaattattattactattattttcttataattgtctaattcaaatgttcacaaatgcagctgcaataaacgcggtat |
27945407 |
T |
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| Q |
111 |
acatgcagacatacttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgcttgtggggtatggttctggagctggagc |
210 |
Q |
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| T |
27945408 |
acatgcagacatacgtgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgcttgtggggtatggttctggagctggagc |
27945507 |
T |
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| Q |
211 |
tgatatgaaggagaaggagaagcc |
234 |
Q |
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| T |
27945508 |
tgatatgaaggagaaggagaagcc |
27945531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 27549392 - 27549207
Alignment:
| Q |
21 |
aacaatttgaattgtaattattattactattatttt-cttataattgtctaattcaaatgttcacaaatgcagttgcaataaacgcggtatacatgcaga |
119 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |
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| T |
27549392 |
aacaatttgaattataattattattactattattttacttataattatctaattcaaatgttcacaaatgcagttgccataaatgcggcatacatgcaga |
27549293 |
T |
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| Q |
120 |
catacttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttggagttttgcttgtggggtatggttctggagct |
205 |
Q |
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| T |
27549292 |
catacgtgggaggtgtatcgtgcccatacacttgtacaaggaggctggatcatggagttttgctggtggggtacggttctggagct |
27549207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 26766209 - 26766337
Alignment:
| Q |
76 |
aatgttcacaaatgcagttgcaataaacgcggtatacatgcagacatacttgggaggaatatcatgcccatacatatgtacaaggaggctggatcttgga |
175 |
Q |
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||||| ||||||||||||||| | || || ||||| ||||| || ||| | |||||| ||||||| ||||||||||| ||| ||| || |||| |||| |
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| T |
26766209 |
aatgtgcacaaatgcagttgccttgaatgccgtatatatgcaaacgtacgttggaggagtatcatgtccatacatatgctcaaagagactagatcatgga |
26766308 |
T |
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| Q |
176 |
gttttgcttgtggggtatggttctggagc |
204 |
Q |
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|| || || ||||| ||||| |||||||| |
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| T |
26766309 |
gtgttactggtgggatatggatctggagc |
26766337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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