View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_3 (Length: 573)
Name: NF5633_low_3
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 169 - 511
Target Start/End: Original strand, 19922072 - 19922413
Alignment:
| Q |
169 |
aagtaccggtcatatttataaggaaggtaaaaggtaaaaaatgattaatttcacaatggttagtaatgtatgaaaatgtatagaaacattgattttagtc |
268 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19922072 |
aagtacaggtcatatttgtaaggaaggtaaaaggtaaaaaatgattaatttcacaacggttagtaatgtatgaaaatgtatagaaacattgattttagtc |
19922171 |
T |
|
| Q |
269 |
catttcatggtcatcttaaatgcgttcacatatttactacgccgataatcgttggattgaaatcgactcgtgtagatttgaacgtcataaatttatttat |
368 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| |
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| T |
19922172 |
catttcatg-tcatcttaaatgcgttcacatatttactacgccgataatcgttggattgaaatcgatttgtgtagatttgaacttcataaatttatttat |
19922270 |
T |
|
| Q |
369 |
taaaaatattgaaagtttatttaaaattaatactgtgtattcttgattcaaagtattttgacgcgttgaatatatgatttgcaacgaccgtattgaatgc |
468 |
Q |
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|||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| ||| |||| |||||||||| |
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| T |
19922271 |
taaaaaaattgaaagtttatctaaaattaatagcgtgtagtcttgattcaaagtattttgatgcgttgaatatatgatttacaaagaccatattgaatgc |
19922370 |
T |
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| Q |
469 |
cttcaaactataaaatactttttaatatctttatgttccctta |
511 |
Q |
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||||||||||||||| ||||||||||||| |||||||||| |
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| T |
19922371 |
gttcaaactataaaatttcttttaatatctttttgttccctta |
19922413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 177 - 496
Target Start/End: Complemental strand, 19922764 - 19922442
Alignment:
| Q |
177 |
gtcatatttataaggaaggtaaaaggtaaaaaatgattaatttcacaatggttagtaatgtatgaaaatgtatagaaacattgattttagtccatttcat |
276 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| |||||| |
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| T |
19922764 |
gtcatatttgtaaggaaggtaaaaggtaaaaaatgattaatttcacaacggttagtaatgtatgaaaatgtata--aacatttattttagtcaatttcaa |
19922667 |
T |
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| Q |
277 |
ggtcat------cttaaatgcgttcacatatttactacgccgataatcgttggattgaaatcgactcgtgtagatttgaacgtcataaatttatttatta |
370 |
Q |
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| T |
19922666 |
tgtcatttaaatcttaaatatgttcacatatttactatgccgatgatcgttggatagaaatcgattcgtgtagatttgaacgtcataaatttatttatta |
19922567 |
T |
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| Q |
371 |
aaaatattgaaagtttatttaaaattaatactgtgtattcttgattcaaagtattttgacgcgttgaatatatgatttgcaacgaccgtattgaatgcct |
470 |
Q |
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|||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
19922566 |
aaaaaattgaaagtttatttaaaattaatatcgtgtagtcttgattcaaagtattttgacgcgttgaatatatgatttgcaacgaccgtattaaatg-cg |
19922468 |
T |
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| Q |
471 |
tcaaactataaaatactttttaatat |
496 |
Q |
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||||||||||||||| ||||||||| |
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| T |
19922467 |
tcaaactataaaatatcttttaatat |
19922442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 177 - 397
Target Start/End: Complemental strand, 6389967 - 6389748
Alignment:
| Q |
177 |
gtcatatttataaggaaggtaaaaggtaaaaaatgattaatttcacaatggttagtaatgtatgaaaatgtatagaaacattgattttagtccatttcat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
6389967 |
gtcatatttataaggaaggtaaaaggtaaaaaatgattaatttcacaacggttaggaaagtaagaaaatgtataaaaacattgattttagtatatttcat |
6389868 |
T |
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| Q |
277 |
ggtcatcttaaatgcgttcacatatttactacgccgataatcgttggattgaaatcgactcgtgtagatttgaacgtcataaatttatttattaaaaata |
376 |
Q |
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||||||||||| |||||||| |||||||| || | ||| ||||||||||||||| ||| ||||||||||| ||| |||||| ||||||| |||| | |
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| T |
6389867 |
actcatcttaaatacgttcacacatttactatatcg-tgatctttggattgaaatcgattcgcgtagatttgaatgtcgtaaattaatttattgaaaaaa |
6389769 |
T |
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| Q |
377 |
ttgaaagtttatttaaaatta |
397 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
6389768 |
ttgaaagtttattcaaaatta |
6389748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 217 - 494
Target Start/End: Complemental strand, 6389286 - 6389008
Alignment:
| Q |
217 |
tttcacaatggttagtaatgtatgaaaatgtatagaaacattgattttagtccatttcatggtcatcttaaatgcgttcacatatttactacgccgataa |
316 |
Q |
| |
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|||||||||| ||||||||||| |||| |||| ||||||| ||||||||||||||||| | || ||||||||||| |||||| | |||| | || | | |
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| T |
6389286 |
tttcacaatgattagtaatgtaagaaagtgtaaagaaacagtgattttagtccatttc-tagt-atcttaaatgcattcacacacttaccgtgtcggtga |
6389189 |
T |
|
| Q |
317 |
tcgttggattgaaatcgactcgtgtagatttgaacgtcataaatttatttattaaaaatattg---aaagtttatttaaaattaatactgtgtattcttg |
413 |
Q |
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| |||||||||||||||| | | |||||||| || || ||||||| |||||||||| | ||| ||||||||||| ||| | |||| ||||| |
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| T |
6389188 |
ttgttggattgaaatcgattagcgtagattttaaaatcggaaatttagttattaaaaaaaaaccaaaaaatttatttaaaactaacaacatgtagtcttg |
6389089 |
T |
|
| Q |
414 |
attcaaagtattttgacgcgttgaatatatgatttgcaacgaccgtattgaatgccttcaaactataaaatactttttaat |
494 |
Q |
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|||||| ||||||||||||||||||| || |||| ||||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
6389088 |
attcaacatattttgacgcgttgaatacattattttcaacgaccgtattgaatgcgttaaaactataaaatatcttttaat |
6389008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 425 - 483
Target Start/End: Complemental strand, 6389745 - 6389687
Alignment:
| Q |
425 |
tttgacgcgttgaatatatgatttgcaacgaccgtattgaatgccttcaaactataaaa |
483 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |
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| T |
6389745 |
tttgacgcgttgaatacatgatttgcaacaaccgtattgaatgcgttcaaactataaaa |
6389687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 6389689 - 6389625
Alignment:
| Q |
418 |
aaagtattttgacgcgttgaatatatgatttgcaacgaccgtattgaatgccttcaaactataaaa |
483 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||| ||||||||||| |||||||||||||| |
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| T |
6389689 |
aaagtattttgacgcgttgaatacat-atttgcaacgactgtattgaatgcattcaaactataaaa |
6389625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 418 - 485
Target Start/End: Complemental strand, 6389503 - 6389437
Alignment:
| Q |
418 |
aaagtattttgacgcgttgaatatatgatttgcaacgaccgtattgaatgccttcaaactataaaata |
485 |
Q |
| |
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||||||||||||||||||||||| || ||||||||| ||| |||||||||| |||||||||||||||| |
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| T |
6389503 |
aaagtattttgacgcgttgaatacat-atttgcaacaaccatattgaatgcgttcaaactataaaata |
6389437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 6389565 - 6389501
Alignment:
| Q |
418 |
aaagtattttgacgcgttgaatatatgatttgcaacgaccgtattgaatgccttcaaactataaaa |
483 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||| |
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| T |
6389565 |
aaagtattttgacgcgttgaatacat-atttgcaacgaccatattgaatgtgttcaaactataaaa |
6389501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 6389627 - 6389563
Alignment:
| Q |
418 |
aaagtattttgacgcgttgaatatatgatttgcaacgaccgtattgaatgccttcaaactataaaa |
483 |
Q |
| |
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||||||||||||||||||| ||| || ||||||||||| ||||||||||| |||||||||||||| |
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| T |
6389627 |
aaagtattttgacgcgttggatacat-atttgcaacgatcgtattgaatgtgttcaaactataaaa |
6389563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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