View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_30 (Length: 228)
Name: NF5633_low_30
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 887527 - 887328
Alignment:
| Q |
24 |
gagttaagtcagaccttcattggctctgttggtgtattttagtcttgttgtatttcttggtgttttttatttgggcagctttgttaagcttgttcttact |
123 |
Q |
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| T |
887527 |
gagttaagtcagaccttcattggctctgttggtgtattttagtcttgttgtatttcttggtgttttttatttgggcagctttgttaagcttgttcttact |
887428 |
T |
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| Q |
124 |
gatgtatttctatgtacccttcttctagttcaagcatttgctgggttagtatcttaaataaaattgcataatcatcgaaagcaaatgcaagggtgatttt |
223 |
Q |
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| T |
887427 |
gatgtatttctatgtacccttcttctagttcaagcatttgctgggttagtatcttaaataaaattgcataatcatcgaaagcaaatgcaagggtgatttt |
887328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 7420825 - 7420691
Alignment:
| Q |
39 |
ttcattggctctgttggtgtattttagtcttgttgtatttcttggtgttttttatttgggcagctttgttaagcttgttcttactgatgtatttctatgt |
138 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||||||| |
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| T |
7420825 |
ttcattggctttgttggtgtattttagtcttgttgtatttcttggtgtttt--atttgggcagctttgttaagcttgttcttactgatatttatctatgt |
7420728 |
T |
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| Q |
139 |
acccttcttctagttcaagcatttgctgggttagtat |
175 |
Q |
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| T |
7420727 |
atccttcttctagttcaagcatttgctgggttagtat |
7420691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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