View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_31 (Length: 223)
Name: NF5633_low_31
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_31 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 37547409 - 37547617
Alignment:
| Q |
16 |
aaagagacatttgatctcgtccaaatgatactagatgagatattttactgttttaggctttagcattgatacatatctttgataaattaaaa-cggtatt |
114 |
Q |
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| T |
37547409 |
aaagagacatttgatctcgtccaaatgatactagatgagatattttactgttttaggctttagcattgatacatatctttgataaattaaaaacggtatt |
37547508 |
T |
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| Q |
115 |
tttcttaaattgaattacgtcagtttccttgaatatatattacgttaaaaacgattaacgaaaagcatcgagaagcaagataagcttagattggacgcag |
214 |
Q |
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| T |
37547509 |
tttcttaaattgaattacgtcagtttccttgaatatatattacgttaaaaacgattaacgaaaagcatcgagaagcaagataagattagattggacgcag |
37547608 |
T |
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| Q |
215 |
tcatagaac |
223 |
Q |
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||||||||| |
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| T |
37547609 |
tcatagaac |
37547617 |
T |
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