View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_6 (Length: 480)
Name: NF5633_low_6
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 25982209 - 25981995
Alignment:
| Q |
6 |
agcagcacagaccacgaagaaagccacgtgagaaattaaacaacaatcttaaactaattgtcaaatatttaaaacaaaataaaaagatgttttattctaa |
105 |
Q |
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| T |
25982209 |
agcatcacaaaccacgaagaaagccacgtgagaaactaaacaacaatcttaaa------------tatttaaaacaaaataaaaaggtgttttattctaa |
25982122 |
T |
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| Q |
106 |
agagcctagtattgaaactcacacacactaaacgttgaaaggtgaaaactacggattcaaattcatgtatccatatatcaaacggctttctaatatttga |
205 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
25982121 |
agagtctagtattgaaactcacacacactaaacgttgaaaggtgaaaactacggattcaaattcatgtgcccatatatcaaacggc-ttctaatatttga |
25982023 |
T |
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| Q |
206 |
ccatctgagctagacttactggacaatc |
233 |
Q |
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| T |
25982022 |
ccatctgagttagacttactggacaatc |
25981995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 311 - 460
Target Start/End: Complemental strand, 25981907 - 25981758
Alignment:
| Q |
311 |
aaaaagtattttctatagtaaattacctttgactaattaatatttaaattttaacaatgtcataattacattatatatatacgcacacatacgaactgca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25981907 |
aaaaagtattttctatagtaaattacctttgactaattaatatttagattttaacaatgtcataattacattatatatatacgcacacatacgaactgca |
25981808 |
T |
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| Q |
411 |
atttttaaacattccaaaattctcatcaacagttgaatatacacacacac |
460 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| | |||||| |
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| T |
25981807 |
atttttaaacattccaaaattctcatcaacagttaaatatatatacacac |
25981758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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