View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_7 (Length: 471)
Name: NF5633_low_7
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 12875256 - 12874838
Alignment:
| Q |
20 |
gttcgtatatctagcatgtataagttttattataaggacacttatataaatgaaagtaatataatataaatgaaatggattactggtaaaggggagtcag |
119 |
Q |
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| T |
12875256 |
gttcgtatatctagcatgtataagttttattataaggacacttatataaatgaaagtaatataatataaatgaaatggattactggtaaaggggagtcag |
12875157 |
T |
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| Q |
120 |
atgctttgaaggctccttccattctcttataatcaatgggattaagagaagcagcagcaactttgataagaacttgatcatccttcacttcaggaatagg |
219 |
Q |
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| T |
12875156 |
aggctttgaaggctccttccattctcttataatcaatgggattaagagaagcagcagcaactttgataagaacttgatcatccttcacttgaggaatagg |
12875057 |
T |
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| Q |
220 |
cacgtttggatcaaatttgagaacatcaacagagtgaccatattctgagtaagtccaagcttttatggtagttatttcagatgccatgattgttggaaat |
319 |
Q |
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| T |
12875056 |
cacgtttggatcaaacttgagaacatcaacagagtgaccatattctgagtaagtccaagctttgatggtagttatttcagaggccatgattgttggaaat |
12874957 |
T |
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| Q |
320 |
gagaaatgaattatttgataaaagtgatatgaggataataaaatatcagcttattgactg------accatgcttttaacgtgattggataaacgtatat |
413 |
Q |
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| T |
12874956 |
gagaaatgaattatttgataaaagtgatttgaggataataaaatatcagcttattgactgaccaagaccatgcttttaacgtgattggataaacgtatat |
12874857 |
T |
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| Q |
414 |
ttaaagtgcttttgggaga |
432 |
Q |
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| T |
12874856 |
ttaaagtgcttttgggaga |
12874838 |
T |
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