View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_9 (Length: 425)
Name: NF5633_low_9
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 55127901 - 55127511
Alignment:
| Q |
18 |
atgagcacgtagatattcatattaatccacgttttatacaaggaaggacttaactataatttgttgctttgagaaaagagaatcacatcatgtgggaaac |
117 |
Q |
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| T |
55127901 |
atgagcacgtagatattcatattaatccacgttttatacaaggaaggacttaactacaatttgttgctttgagaaaagagaatcacatcatgtgggaaac |
55127802 |
T |
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| Q |
118 |
atcttcatggatcaattcttaaacaacaaaaaagcgttcaaagaatgaaactatgtttctttagttgtttgtcgttatcttaactttccattcttcattg |
217 |
Q |
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| T |
55127801 |
atcttcatggatcaattcttaaacaacaaaaaagcgttcaaagaatgaaactatgtttctttagttgtttgtcgttatcttaactttccattcttcattg |
55127702 |
T |
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| Q |
218 |
ctttgctaatttgcttttgctccgacagaaacataatttatgacagaaaaaggtggttcgtctttgtccttttttcgtggaaatcgcgtctgatttacat |
317 |
Q |
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| T |
55127701 |
ctttgctaatttgcttttgctccgacagaaacataatttatgacagaaaaaggtggttcgtctttgtccttttttcttggaaatcgcgtctgatttacat |
55127602 |
T |
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| Q |
318 |
acatacattattaaacgatatgtgatgaacctcaattatatattattttgtaattcttatagaaaacttgctaaaga-ttttttgtctttatgttcata |
415 |
Q |
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| T |
55127601 |
----acattattaaacgatatgtgatgaacctcaat----tattattttgtaattcttatagaaaacttgctaaagatttttttgtttttatgttcata |
55127511 |
T |
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