View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5634-Insertion-3 (Length: 626)

Name: NF5634-Insertion-3
Description: NF5634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5634-Insertion-3
NF5634-Insertion-3
[»] chr7 (20 HSPs)
chr7 (8-626)||(35308353-35308970)
chr7 (32-134)||(44874479-44874581)
chr7 (8-139)||(33834267-33834398)
chr7 (8-140)||(6001547-6001679)
chr7 (8-140)||(25620211-25620343)
chr7 (8-94)||(3519837-3519923)
chr7 (42-140)||(20305365-20305467)
chr7 (8-139)||(1596669-1596800)
chr7 (8-139)||(21861370-21861501)
chr7 (8-134)||(31892233-31892359)
chr7 (8-140)||(36277103-36277235)
chr7 (25-140)||(38127373-38127489)
chr7 (8-94)||(40746145-40746230)
chr7 (8-57)||(2315138-2315187)
chr7 (21-94)||(3519929-3520002)
chr7 (8-85)||(35308258-35308335)
chr7 (8-140)||(48661431-48661564)
chr7 (8-140)||(2404286-2404417)
chr7 (8-140)||(29469680-29469812)
chr7 (27-134)||(32292599-32292707)
[»] chr5 (21 HSPs)
chr5 (8-140)||(6919306-6919438)
chr5 (8-140)||(95378-95510)
chr5 (8-139)||(32908830-32908960)
chr5 (8-134)||(18333577-18333702)
chr5 (8-139)||(9368671-9368802)
chr5 (21-140)||(43117722-43117841)
chr5 (8-117)||(13700702-13700811)
chr5 (8-57)||(15590096-15590145)
chr5 (8-140)||(24269982-24270115)
chr5 (8-140)||(24346613-24346746)
chr5 (8-140)||(17150345-17150477)
chr5 (8-140)||(24531674-24531806)
chr5 (42-140)||(6413568-6413666)
chr5 (23-93)||(17352561-17352631)
chr5 (8-94)||(41666869-41666955)
chr5 (8-57)||(8081226-8081275)
chr5 (8-57)||(11896027-11896076)
chr5 (8-109)||(33337350-33337451)
chr5 (8-140)||(15480397-15480529)
chr5 (8-140)||(25258178-25258310)
chr5 (8-140)||(25321968-25322100)
[»] chr3 (11 HSPs)
chr3 (8-140)||(4155399-4155531)
chr3 (8-137)||(34992684-34992813)
chr3 (42-141)||(37246764-37246863)
chr3 (8-141)||(20327726-20327859)
chr3 (8-139)||(13574797-13574929)
chr3 (21-130)||(19954342-19954451)
chr3 (8-57)||(29215701-29215749)
chr3 (8-94)||(16239713-16239799)
chr3 (8-57)||(22729651-22729700)
chr3 (8-57)||(31317389-31317438)
chr3 (21-57)||(39683393-39683429)
[»] scaffold0519 (1 HSPs)
scaffold0519 (8-139)||(1992-2123)
[»] chr8 (18 HSPs)
chr8 (8-139)||(11232306-11232437)
chr8 (8-140)||(41790733-41790865)
chr8 (8-139)||(3157436-3157567)
chr8 (8-140)||(8084202-8084334)
chr8 (8-140)||(20301336-20301468)
chr8 (8-140)||(21087968-21088100)
chr8 (8-104)||(3157121-3157217)
chr8 (8-140)||(20094672-20094804)
chr8 (8-94)||(39052649-39052735)
chr8 (8-94)||(39052806-39052892)
chr8 (42-139)||(7669495-7669592)
chr8 (21-134)||(18004219-18004332)
chr8 (8-139)||(5932061-5932192)
chr8 (21-136)||(35682906-35683021)
chr8 (8-57)||(5589852-5589901)
chr8 (8-93)||(8716237-8716322)
chr8 (21-94)||(39960078-39960151)
chr8 (8-48)||(8849349-8849389)
[»] chr4 (10 HSPs)
chr4 (21-140)||(35819018-35819137)
chr4 (8-140)||(6218279-6218411)
chr4 (8-140)||(28245638-28245770)
chr4 (8-139)||(35796854-35796985)
chr4 (8-137)||(21750154-21750283)
chr4 (50-139)||(32002399-32002487)
chr4 (8-111)||(5398323-5398425)
chr4 (8-140)||(50543442-50543576)
chr4 (21-141)||(4645716-4645836)
chr4 (8-70)||(43743129-43743191)
[»] chr1 (15 HSPs)
chr1 (8-130)||(17412417-17412539)
chr1 (8-139)||(4112652-4112783)
chr1 (8-140)||(27413422-27413554)
chr1 (21-140)||(4098293-4098412)
chr1 (8-139)||(7307797-7307928)
chr1 (8-112)||(369734-369839)
chr1 (8-140)||(35772104-35772236)
chr1 (8-139)||(38668201-38668332)
chr1 (21-139)||(2859517-2859635)
chr1 (8-111)||(25713262-25713365)
chr1 (8-57)||(8870801-8870850)
chr1 (8-57)||(12325409-12325458)
chr1 (8-57)||(12376550-12376599)
chr1 (75-140)||(38733226-38733291)
chr1 (45-130)||(40524789-40524874)
[»] chr2 (15 HSPs)
chr2 (8-140)||(2029844-2029976)
chr2 (8-140)||(16419342-16419474)
chr2 (8-140)||(33606166-33606298)
chr2 (8-130)||(16533397-16533519)
chr2 (8-140)||(15124660-15124792)
chr2 (8-130)||(44404038-44404162)
chr2 (8-139)||(14466287-14466418)
chr2 (8-111)||(37812380-37812483)
chr2 (21-73)||(33381078-33381130)
chr2 (8-139)||(36352038-36352167)
chr2 (8-103)||(5711551-5711646)
chr2 (31-141)||(7748068-7748179)
chr2 (8-94)||(17525211-17525297)
chr2 (8-70)||(36063291-36063353)
chr2 (21-57)||(5594185-5594221)
[»] scaffold0366 (2 HSPs)
scaffold0366 (8-130)||(14488-14612)
scaffold0366 (8-130)||(10822-10946)
[»] chr6 (14 HSPs)
chr6 (44-140)||(30849315-30849411)
chr6 (8-139)||(13353277-13353408)
chr6 (8-139)||(33796402-33796533)
chr6 (8-133)||(6542820-6542945)
chr6 (8-140)||(6400732-6400863)
chr6 (8-140)||(12330056-12330188)
chr6 (8-139)||(33494615-33494746)
chr6 (21-139)||(3680088-3680206)
chr6 (8-130)||(17147772-17147894)
chr6 (8-113)||(20830615-20830720)
chr6 (8-94)||(4868689-4868775)
chr6 (42-111)||(7638759-7638828)
chr6 (8-57)||(34345555-34345604)
chr6 (21-141)||(33631695-33631815)
[»] scaffold0092 (1 HSPs)
scaffold0092 (8-140)||(5730-5862)
[»] scaffold0459 (1 HSPs)
scaffold0459 (8-130)||(13181-13305)
[»] scaffold0692 (1 HSPs)
scaffold0692 (10-140)||(5633-5763)
[»] scaffold0542 (1 HSPs)
scaffold0542 (42-116)||(5728-5802)


Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 626
Target Start/End: Original strand, 35308353 - 35308970
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |    
T  35308353 ttaacacaccctatcacaaccaacattattgggtttggttcgtggacatagacgatgggtgacccgatagcgaaaacctaatagcagatgatctaataaa 35308452  T
Q  108 tcttaaagagactttgataccatcttaaaaatcaggatgtttagatccaacacaaccccacaatattaatctacacaatttacgcgaaggaaattaaatc 207  Q
    ||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| | | ||| |||| || ||||||||    
T  35308453 tcttaaagagactctgataccatcttaaaaatcgtcatgtttagatccaacacaaccccacaatattaatctaca-attgtacacgaatgatattaaatc 35308551  T
Q  208 cacacacaaaatataaccattgtatgctcaaaataatttgtatataacaattggtattctatatcttaactattatcaatagtagtaccatattagtctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35308552 cacacacaaaatataaccattgtatgctcaaaataatttgtatataacaattggtattctatatcttaactattatcaatagtagtaccatattagtctt 35308651  T
Q  308 ttgatgaagacgacaaattaagataaagaagcaaattataatggataacacatgtgaggagtcatagtcaaaggtcaactagatcctgtcaatattaacc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35308652 ttgatgaagacgacaaattaagataaagaagcaaattataatggataacacatgtgaggagtcatagtcaaaggtcaactagatcctgtcaatattaacc 35308751  T
Q  408 atcaaaacacacatatagtcagaccatctacctgtaataccaattccctttgtcccttaacttagaggagaaagtactagaatgaaaatccattattttg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35308752 atcaaaacacacatatagtcagaccatctacctgtaataccaattccctttgtcccttaacttagaggagaaagtactagaatgaaaatccattattttg 35308851  T
Q  508 cgatatgactaatatacctcaattgcatgaagttggtcacacaaaaatagtgatattgaatttcagtctactagattaggcaacttagccagcttataga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35308852 cgatatgactaatatacctcaattgcatgaagttggtcacacaaaaatagtgatattgaatttcagtctactagattaggcaacttagccagcttataga 35308951  T
Q  608 aaatggaaaattaaattgg 626  Q
    |||||||||||||||||||    
T  35308952 aaatggaaaattaaattgg 35308970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 44874479 - 44874581
Alignment:
Q  32 attattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagactttgataccatc 131  Q
    ||||||||||||||||||| |||||| | |||||||||| || | | | |||||| ||||||| ||| ||||| |||||| |||||||| ||||||||||    
T  44874479 attattgggtttggttcgtagacataaatgatgggtgacccgattgtggaaacctgatagcaggtgacccaatggatcttgaagagactctgataccatc 44874578  T
Q  132 tta 134  Q
    |||    
T  44874579 tta 44874581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 33834398 - 33834267
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||| |||||  |||||||||||| ||||||| |||||||||||||||| | | |||||| | || ||| |||||||| ||||||| ||  ||||| ||    
T  33834398 ttaacccaccccttcacgaccaacactattgggcttggttcgtggacataaatggtgggtggcccgatagggaaaacctgatagcaggtggcccaatgga 33834299  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    ||||  |||| || ||||||||||||| ||||    
T  33834298 tcttggagaggctctgataccatcttagaaat 33834267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 6001547 - 6001679
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||| |  ||||||||| ||||||| || |||||||||||| ||| | | |||| |||||| ||| | |||||| ||||||||||| | |||| |    
T  6001547 ttaacacactccctcacgaccagcattattaggcttggttcgtggaaataaatggtgggagactcgataggggaaacctgatagcagatgacctaataaa 6001646  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    | || ||||| || ||||||||||||| |||||    
T  6001647 ttttgaagaggctctgataccatcttagaaatc 6001679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 25620343 - 25620211
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||| |  |||||||||||| ||||||| |||||||||||||||| | | |||||| | |  ||||| |||||| ||||||| ||  ||||| ||    
T  25620343 ttaacacacaccttcacgaccaacactattgggcttggttcgtggacataaatggtgggtggcccaatagcggaaacctgatagcaggtggcccaatgga 25620244  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||||||||||| |||||    
T  25620243 tcttggagaggctctgataccatcttagaaatc 25620211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 3519837 - 3519923
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcag 94  Q
    |||||||||||  ||||||||| |||||||||| |||||||||||||||| | | |||||| | || ||||| |||||| |||||||    
T  3519837 ttaacacaccccctcacgaccagcattattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagcag 3519923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 20305467 - 20305365
Alignment:
Q  42 ttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatga----tccaatagatcttaaagagactttgataccatcttaaaa 137  Q
    |||||||||||||||| | | |||||| | || ||||| |||||| |||||||||||    |||||| |||||| ||||| || ||||||||||||||||    
T  20305467 ttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagcagatgacccatccaatggatcttgaagaggctctgataccatcttaaaa 20305368  T
Q  138 atc 140  Q
    |||    
T  20305367 atc 20305365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 1596800 - 1596669
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||| || ||||||||| || ||||||| |||||||||||||||| | | |||||| | || ||||| |||||| ||| ||  ||  ||||| ||    
T  1596800 ttaacacacactctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgataacatgtggcccaatgga 1596701  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    ||||  |||| || ||||||||||||| ||||    
T  1596700 tcttggagaggctctgataccatcttagaaat 1596669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 21861501 - 21861370
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || |||| || |||||||||||||||| | | |||||| | || ||||| |||||| ||| ||| ||  ||||| ||    
T  21861501 ttaacacaccccctcacgaccagcactattaggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgataacaggtggcccaatgga 21861402  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    ||||  |||| || ||||||||||||| ||||    
T  21861401 tcttggagaggctctgataccatcttagaaat 21861370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 31892359 - 31892233
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| |||||||||| |||||||||||||||| | | |||||| |  | || || |||||| ||||||| ||  |||||||     
T  31892359 ttaacacaccccctcacgaccatcattattgggcttggttcgtggacataaatggtgggtggcctgataacggaaacctgatagcaggtggcccaatagg 31892260  T
Q  108 tcttaaagagactttgataccatctta 134  Q
    ||||  |||| || |||| ||||||||    
T  31892259 tcttggagaggctctgattccatctta 31892233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 36277103 - 36277235
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | ||||||   || ||||| |||||| |||| || ||  ||||| ||    
T  36277103 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatagtaggtggcccaatgga 36277202  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||| ||||||| |||||    
T  36277203 tcttggagaggctctgataacatcttagaaatc 36277235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 38127373 - 38127489
Alignment:
Q  25 gaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaa-agagactttg 123  Q
    ||||||||  |||| |||| ||| ||||||||| | ||||| ||| ||| |||||||||  | |||||||||||  |||| |||||||| ||||  ||||    
T  38127373 gaccaacacaattgtgtttagtttgtggacataaatgatggatgattcgatagcgaaaatatgatagcagatgactcaattgatcttaacagaggatttg 38127472  T
Q  124 ataccatcttaaaaatc 140  Q
    |||| ||||||||||||    
T  38127473 atacaatcttaaaaatc 38127489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 40746145 - 40746230
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcag 94  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | ||||||  ||| || ||||||||| |||||||    
T  40746145 ttaacacacccc-tcacgaccagcactattgggcttggttcgtggacataaatggtgggtggttcgataacgaaaacctgatagcag 40746230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 2315138 - 2315187
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||| ||||||  |||||||||||| ||||||| ||||||||||||||||    
T  2315138 ttaatacaccccctcacgaccaacactattgggcttggttcgtggacata 2315187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 3519929 - 3520002
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcag 94  Q
    ||||||||| || ||||||| |||||||||||||||| | | |||||| | || |||||||||||  |||||||    
T  3519929 tcacgaccagcactattgggcttggttcgtggacataaatggtgggtgtcccgatagcgaaaaccagatagcag 3520002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 35308258 - 35308335
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacc 85  Q
    ||||||||| |  ||||||||| || ||||||| |||||||||||||||| ||| ||| ||||  | |||||||||||    
T  35308258 ttaacacactcattcacgaccagcactattgggcttggttcgtggacataaacggtggatgacctgatagcgaaaacc 35308335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 48661431 - 48661564
Alignment:
Q  8 ttaacacaccctatcacga-ccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatag 106  Q
    |||||||||||  |||||| |||||| ||||||| |||||||||||||||| | | |||||| | ||  |||| |||||| ||||||| ||   |||| |    
T  48661431 ttaacacaccccctcacgaaccaacactattgggcttggttcgtggacataaatggtgggtggcccgaaagcggaaacctgatagcaggtggctcaatgg 48661530  T
Q  107 atcttaaagagactttgataccatcttaaaaatc 140  Q
     |||||||||| || ||||| ||| ||| |||||    
T  48661531 ttcttaaagaggctctgatatcatattagaaatc 48661564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 2404286 - 2404417
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||| | ||||||||| || ||||| | |||||||||||||||| ||| | ||||   |  ||||| |||||| ||||||| ||| ||||| ||    
T  2404286 ttaacacacc-tctcacgaccagcactattgcgcttggttcgtggacataaacggtaggtggtccaatagcggaaacctgatagcaggtgacccaatgga 2404384  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    | |  ||||| || ||||||||||||| |||||    
T  2404385 tttcgaagaggctctgataccatcttagaaatc 2404417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 29469812 - 29469680
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| ||| |||||||||||| | | |||||| | || ||||| || ||| ||| ||| ||  ||||| ||    
T  29469812 ttaacacaccccctcacgaccagcactattgggcttgattcgtggacataaatggtgggtggcccgatagcggaagcctgataacaggtggcccaatgga 29469713  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||||||| ||| |||||    
T  29469712 tcttggagaggctctgataccatattagaaatc 29469680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 32292707 - 32292599
Alignment:
Q  27 ccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatctt-aaagagactttgat 125  Q
    |||||| ||||||| ||||| |||||| ||| | | |||||||| || |||||||||||| |||| || ||| || |||| ||||  | ||||||| |||    
T  32292707 ccaacactattgggcttggtgcgtggatatatatggtgggtgacccgatagcgaaaacctgatagaaggtgacccgataggtcttggaggagacttggat 32292608  T
Q  126 accatctta 134  Q
    |||||||||    
T  32292607 accatctta 32292599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 6919306 - 6919438
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||| | |||||||||| || ||||||| |||||||||||||||| | | || |||   ||  |||| |||||| |||||||||||  |||| ||    
T  6919306 ttaacacacaccatcacgaccagcactattgggcttggttcgtggacataaatggtgagtggtccgaaagcggaaacctgatagcagatgactcaatgga 6919405  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    |||| ||||| ||||||||||||||||||||||    
T  6919406 tcttgaagaggctttgataccatcttaaaaatc 6919438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 95378 - 95510
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||| | || | ||| |||||| ||||||| ||  ||||| ||    
T  95378 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatggcggaaacctgatagcaggtggcccaatgga 95477  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||||||||||| |||||    
T  95478 tcttggagaggctctgataccatcttagaaatc 95510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 32908830 - 32908960
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||||||||||||| |||||| | | |||||||| || ||||  |||||| ||||||||||  ||||| ||    
T  32908830 ttaacacacccc-tcacgaccagcactattgggtttggttcgttgacataaatggtgggtgacccgatagcagaaacctgatagcagatggcccaatgga 32908928  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    |||| ||||| || | ||| ||||||| ||||    
T  32908929 tcttgaagaggctctaatatcatcttagaaat 32908960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 18333577 - 18333702
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || || |||| |||||||||||||||| | | |||||| | || |||||||||||| ||||||| ||  || || ||    
T  18333577 ttaacacacccc-tcacgaccagcactaatgggcttggttcgtggacataaatggtgggtggcccgatagcgaaaacctgatagcaggtggcccgatgga 18333675  T
Q  108 tcttaaagagactttgataccatctta 134  Q
    |||| ||||| || |||||||||||||    
T  18333676 tcttgaagaggctctgataccatctta 18333702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 9368802 - 9368671
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||| ||||||  ||||||||| || |||||||||||||||||||||||| | | ||||||   |  ||||| |||||| ||||||| ||  ||||| ||    
T  9368802 ttaagacaccccctcacgaccagcactattgggtttggttcgtggacatacatggtgggtggtccaatagcggaaacctgatagcaggtggcccaatgga 9368703  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    |||| ||||| || |||||||| |||| ||||    
T  9368702 tcttgaagaggctctgataccaccttagaaat 9368671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 43117841 - 43117722
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagact 120  Q
    |||||||||||| ||||| | |||||||||||||||| | ||||||||   || ||||| |||||| ||||||| ||  ||||||||||||  | || ||    
T  43117841 tcacgaccaacactattgagcttggttcgtggacataaatgatgggtggtccgatagcggaaacctgatagcaggtggcccaatagatcttggaaaggct 43117742  T
Q  121 ttgataccatcttaaaaatc 140  Q
     |||||| |||||| |||||    
T  43117741 ctgatactatcttagaaatc 43117722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 13700702 - 13700811
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||| | | |||||||||| ||||||||||||||||||  |||| | | |||||| |  | ||||| |||||| ||||||| ||| ||||| ||    
T  13700702 ttaacacaccttcttacgaccaacactattgggtttggttcgtgatcataaatggtgggtggcctgatagcggaaacctgatagcaggtgacccaatgga 13700801  T
Q  108 tcttaaagag 117  Q
    |||| |||||    
T  13700802 tcttgaagag 13700811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 15590145 - 15590096
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||||||||||  ||||||||| || ||||||||||||||||||||||||    
T  15590145 ttaacacaccccctcacgaccagcactattgggtttggttcgtggacata 15590096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 24269982 - 24270115
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||| | |||||||||||||||| | | |||||| | || || || |||||| ||||||| ||  ||||| ||    
T  24269982 ttaacacaccccctcacgaccagcactattgagcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggcccaatgga 24270081  T
Q  108 tctt-aaagagactttgataccatcttaaaaatc 140  Q
    ||||  | ||| || |||||||||||||||||||    
T  24270082 tcttggaggaggctctgataccatcttaaaaatc 24270115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 24346613 - 24346746
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||| | |||||||||||||||| | | |||||| | || || || |||||| ||||||| ||  ||||| ||    
T  24346613 ttaacacaccccctcacgaccagcactattgagcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggcccaatgga 24346712  T
Q  108 tctt-aaagagactttgataccatcttaaaaatc 140  Q
    ||||  | ||| || |||||||||||||||||||    
T  24346713 tcttggaggaggctctgataccatcttaaaaatc 24346746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 17150345 - 17150477
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  |||| | ||||| ||||||  ||||||  |||||||| | | |||||| | || ||||| |||||| |||| || ||  ||||| ||    
T  17150345 ttaacacaccccctcacaaacaacactattggtattggtttctggacataaatggtgggtggcccgatagcggaaacctgatagtaggtggcccaatgga 17150444  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    |||| ||||| || |||||||||||||||||||    
T  17150445 tcttgaagaggctctgataccatcttaaaaatc 17150477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 24531806 - 24531674
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | ||||||  ||| || |  ||| || ||||||| ||  ||||| ||    
T  24531806 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatgttgggtggttcgataacagaaaactgatagcaggtggcccaatgga 24531707  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    || || |||| || ||||||||||||| |||||    
T  24531706 tcatagagaggctctgataccatcttagaaatc 24531674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 6413568 - 6413666
Alignment:
Q  42 ttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagactttgataccatcttaaaaatc 140  Q
    |||||||||||||||| | | |||||| |||| ||| | | |||| ||||||| ||  ||||| |||||| ||||| |||||||||||| ||| |||||    
T  6413568 ttggttcgtggacataaatggtgggtggctcgatagtggatacctgatagcaggtggcccaatggatcttgaagaggctttgataccatattagaaatc 6413666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 17352561 - 17352631
Alignment:
Q  23 acgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagca 93  Q
    ||||||| |||||||||| |||||||||||||||| ||| | |||||| |  ||||| |||||| ||||||    
T  17352561 acgaccagcattattgggcttggttcgtggacataaacggtaggtgacccaatagcggaaacctgatagca 17352631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 41666869 - 41666955
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcag 94  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||| | || || || |||||| |||||||    
T  41666869 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcag 41666955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 8081226 - 8081275
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||||||||||  ||||||||| || ||||||| ||||||||||||||||    
T  8081226 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacata 8081275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 11896027 - 11896076
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||||||||||  ||||||||| || |||||||||||||||| |||||||    
T  11896027 ttaacacaccccctcacgaccatcactattgggtttggttcgcggacata 11896076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 33337350 - 33337451
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||| ||||| || ||||||| |||||||||||||||| | | |||||| | || | ||| |||||| |||||| ||| |||||| ||    
T  33337350 ttaacacaccccctcatgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatggcggaaacctgatagcaaatggtccaatgga 33337449  T
Q  108 tc 109  Q
    ||    
T  33337450 tc 33337451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 15480529 - 15480397
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||||   ||||||||| ||  ||| || ||||||| |||||||| | | |||||| | |  ||||| |||||| ||||||| ||  ||||| ||    
T  15480529 ttaacacacctcctcacgaccagcacgattaggcttggttcatggacataaatggtgggtggcccaatagcggaaacctgatagcaggtggcccaatgga 15480430  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    |||| ||||| || ||||||||||||| |||||    
T  15480429 tcttgaagaggctctgataccatcttagaaatc 15480397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 25258178 - 25258310
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||| ||||| ||||||| || |||||||||||||||| |   ||||||   || ||||| |||||| ||||||| ||  ||||| ||    
T  25258178 ttaacacaccccctcatgaccagcattatttggcttggttcgtggacataaattgtgggtggtccgatagcggaaacctgatagcaggtggcccaatgga 25258277  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||  || ||||||||||||| |||||    
T  25258278 tcttggagaagctctgataccatcttagaaatc 25258310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 25321968 - 25322100
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||| ||||| ||||||| || |||||||||||||||| |   ||||||   || ||||| |||||| ||||||| ||  ||||| ||    
T  25321968 ttaacacaccccctcatgaccagcattatttggcttggttcgtggacataaattgtgggtggtccgatagcggaaacctgatagcaggtggcccaatgga 25322067  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||  || ||||||||||||| |||||    
T  25322068 tcttggagaagctctgataccatcttagaaatc 25322100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 4155531 - 4155399
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||| ||||||||| || ||||||| ||||||||| |||||| ||| |||||| | || ||||| |||||| ||||||| ||  |||||  |    
T  4155531 ttaacacaccctctcacgaccagcactattgggcttggttcgtcgacataaacggtgggtggcccgatagcggaaacctgatagcaggtggcccaatgaa 4155432  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  ||||||| ||||||||||||| |||||    
T  4155431 tcttggagagactctgataccatcttagaaatc 4155399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 34992813 - 34992684
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||||| ||  |||| |||||| ||||||| ||  ||||| ||    
T  34992813 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtgacccgacagcggaaacctgatagcaggtggcccaatgga 34992714  T
Q  108 tcttaaagagactttgataccatcttaaaa 137  Q
     |||  ||||||| ||||||||||||||||    
T  34992713 ccttggagagactctgataccatcttaaaa 34992684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 37246764 - 37246863
Alignment:
Q  42 ttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagactttgataccatcttaaaaatca 141  Q
    ||||||||| |||||| | | ||| |||| || || ||||||||||||||||| || ||||||  ||||| || ||||||||||||||||||||||||||    
T  37246764 ttggttcgttgacataaatggtggatgacccgataacgaaaacctaatagcaggtggtccaatgaatcttgaatagactttgataccatcttaaaaatca 37246863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 20327726 - 20327859
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  |||||||||||| ||||||| ||||||| |||||||| | | |||||| | || ||||| |||||| ||||||| ||  ||||| ||    
T  20327726 ttaacacacccgctcacgaccaacactattgggcttggttcctggacataaatggtgggtggcccgatagcggaaacctgatagcaggtggcccaatgga 20327825  T
Q  108 tcttaaagagactttgataccatcttaaaaatca 141  Q
    | ||| |||| |  ||||||||| ||| ||||||    
T  20327826 ttttagagaggcactgataccatattagaaatca 20327859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 13574797 - 13574929
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||| |  ||||||| | || ||||||| |||||||||||||||| | | |||||||| || ||||| |||||| ||||||| ||  ||||| ||    
T  13574797 ttaacacactccctcacgactagcactattgggcttggttcgtggacataaatggtgggtgacacgatagcggaaacctgatagcaggtggcccaatgga 13574896  T
Q  108 tcttaa-agagactttgataccatcttaaaaat 139  Q
    ||||||  ||| |||||||||||| ||| ||||    
T  13574897 tcttaactgaggctttgataccatattagaaat 13574929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 19954342 - 19954451
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagact 120  Q
    |||||||||  | ||||||| |||||||||||||||| | | ||||||    | |||||||||||| ||||||||||  ||||| |||||| ||||| ||    
T  19954342 tcacgaccagtactattgggcttggttcgtggacataaatggtgggtggtcagatagcgaaaacctgatagcagatggcccaatggatcttgaagaggct 19954441  T
Q  121 ttgataccat 130  Q
     |||||||||    
T  19954442 ctgataccat 19954451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 29215701 - 29215749
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  29215701 ttaacacacccc-tcacgaccaacactattgggtttggttcgtggacata 29215749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 16239799 - 16239713
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcag 94  Q
    |||||||||||  ||||||||| || ||||| | |||||||||||||||| | | |||||| |||| || || |||||| |||||||    
T  16239799 ttaacacaccccctcacgaccatcactattgagcttggttcgtggacataaatggtgggtggctcgataacggaaacctgatagcag 16239713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 22729700 - 22729651
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||||||||||  ||||||| | |||||||||| ||||||||||||||||    
T  22729700 ttaacacacccgttcacgactagcattattgggcttggttcgtggacata 22729651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 31317438 - 31317389
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||||||||||  ||||||||| || ||||| ||||||||||||||||||    
T  31317438 ttaacacaccccctcacgaccagcactattgagtttggttcgtggacata 31317389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 39683393 - 39683429
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacata 57  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  39683393 tcacgaccagcattattgggcttggttcgtggacata 39683429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 2123 - 1992
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | ||||||||||| ||||| |||||| ||| ||| ||  ||||| ||    
T  2123 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtgactcgatagcggaaacctgataacaggtggcccaatgga 2024  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    ||||  |||| || ||||||||||||| ||||    
T  2023 tcttggagaggctctgataccatcttagaaat 1992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 11232306 - 11232437
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | ||||||||||| ||||| |||||| ||| ||| ||  ||||| ||    
T  11232306 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtgactcgatagcggaaacctgataacaggtggcccaatgga 11232405  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    ||||  |||| || ||||||||||||| ||||    
T  11232406 tcttggagaggctctgataccatcttagaaat 11232437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 41790865 - 41790733
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || | ||||| ||||||| |||||||| | | |||||| |||| ||||| |||||| ||||||| ||  ||||| ||    
T  41790865 ttaacacaccccctcacgaccagcactcttgggcttggttcatggacataaatggtgggtggctcgatagcggaaacctgatagcaggtggcccaatgga 41790766  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    |||| ||||| || ||||||||||||| |||||    
T  41790765 tcttgaagaggctctgataccatcttagaaatc 41790733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 3157436 - 3157567
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||| | || |||||||||||| ||||||| || |||||| ||    
T  3157436 ttaacacacccactcacgaccagcactattgggcttggttcgtggacataaatggtgggtgtcccgatagcgaaaacctgatagcaggtggtccaatgga 3157535  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    | ||  |||| || ||||| ||||||| ||||    
T  3157536 ttttggagaggctctgatatcatcttataaat 3157567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 8084334 - 8084202
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||||  |  |||||||||||| ||||||  ||  ||||| ||    
T  8084334 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtgatccaatagcgaaaacctgatagcatgtggcccaatgga 8084235  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||||||||||| |||||    
T  8084234 tcttggagaggctctgataccatcttagaaatc 8084202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 20301468 - 20301336
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| ||||||||| |||||| | | ||||||   || ||||| |||||| ||||||| ||  ||||| ||    
T  20301468 ttaacacaccccctcacgaccagcactattgggcttggttcgtagacataaatggtgggtggtccgatagcggaaacctgatagcaggtggcccaatgga 20301369  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    |||| ||||| || ||||||||||||| |||||    
T  20301368 tcttgaagaggctctgataccatcttagaaatc 20301336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 21088100 - 21087968
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| ||||||||| |||||| | | ||||||   || ||||| |||||| ||||||| ||  ||||| ||    
T  21088100 ttaacacaccccctcacgaccagcactattgggcttggttcgtagacataaatggtgggtggtccgatagcggaaacctgatagcaggtggcccaatgga 21088001  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    |||| ||||| || ||||||||||||| |||||    
T  21088000 tcttgaagaggctctgataccatcttagaaatc 21087968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 3157121 - 3157217
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaat 104  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||| | || ||||| |||||| ||||||| || ||||||    
T  3157121 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtgtcccgatagcggaaacctgatagcaggtggtccaat 3157217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 20094672 - 20094804
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||| |||  ||||||||| || ||||||| |||||||||||||||| | | |||||| |  | |||||||||||| |||| || ||  ||||| ||    
T  20094672 ttaacacgccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcctgatagcgaaaacctgataggaggtggcccaatgga 20094771  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    |||| |||| ||| |||||||| |||| |||||    
T  20094772 tcttgaagaaactctgataccaacttataaatc 20094804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 39052649 - 39052735
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcag 94  Q
    |||||||||||  |||||||||||| ||||||| |||||||||||||||| | | |||||| |  | ||||| |||||| |||||||    
T  39052649 ttaacacaccccctcacgaccaacactattgggcttggttcgtggacataaatggtgggtggccggatagcggaaacctgatagcag 39052735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 39052806 - 39052892
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcag 94  Q
    |||||||||||  |||||||||||| ||||||| |||||||||||||||| | | |||||| |  | ||||| |||||| |||||||    
T  39052806 ttaacacaccccctcacgaccaacactattgggcttggttcgtggacataaatggtgggtggccggatagcggaaacctgatagcag 39052892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 7669592 - 7669495
Alignment:
Q  42 ttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagactttgataccatcttaaaaat 139  Q
    |||||||||||||||| | | ||||||   || ||| | |||||| ||||||| ||   |||| |||||| |||||||||||||||||||||||||||    
T  7669592 ttggttcgtggacataaatggtgggtggtccgatagtggaaacctgatagcaggtggctcaatggatcttgaagagactttgataccatcttaaaaat 7669495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 18004219 - 18004332
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagact 120  Q
    ||||||||| || |||| || |||||||||||||||| | | |||||| | || ||||| |||||| ||||||| ||  ||||| ||||||  |||| ||    
T  18004219 tcacgaccagcactattaggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagcaggtggcccaatggatcttggagaggct 18004318  T
Q  121 ttgataccatctta 134  Q
     |||||||||||||    
T  18004319 ctgataccatctta 18004332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 5932061 - 5932192
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||| ||||||||| || ||||| | |||||| || |||||| | | |||||| | || || || |||| | |||| || || |||||| ||    
T  5932061 ttaacacaccctttcacgaccagcactattgcgcttggtttgtcgacataaatggtgggtggcccgataacggaaacgtgatagtaggtggtccaatgga 5932160  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    ||||  |||| || ||||||||||||||||||    
T  5932161 tcttggagaggctctgataccatcttaaaaat 5932192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 35682906 - 35683021
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagact 120  Q
    ||||||||| || ||||| | |||||||||||||||| | | |||||| | || ||||| |||||||||||||| ||  ||||| ||||||  |||  ||    
T  35682906 tcacgaccagcactattgagcttggttcgtggacataaatggtgggtggcccgatagcggaaacctaatagcaggtggcccaatggatcttggagatgct 35683005  T
Q  121 ttgataccatcttaaa 136  Q
     ||||||||| |||||    
T  35683006 atgataccatattaaa 35683021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 5589852 - 5589901
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||||||||||  ||||||| | |||||||||| ||||||||||||||||    
T  5589852 ttaacacacccgttcacgactagcattattgggcttggttcgtggacata 5589901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 8716322 - 8716237
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagca 93  Q
    |||||||||||  ||| ||||| || |||| ||||| ||||||||||||| | | | |||||| || ||||| |||||||||||||    
T  8716322 ttaacacaccccgtcatgaccagcagtattaggttttgttcgtggacataaatggtcggtgacccgatagcggaaacctaatagca 8716237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 39960151 - 39960078
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcag 94  Q
    ||||||||| || ||||||| |||||||||||||||| | | |||||  |||| ||||| |||||| |||||||    
T  39960151 tcacgaccagcactattgggcttggttcgtggacataaatggtgggtagctcgatagcggaaacctgatagcag 39960078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 8849389 - 8849349
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttc 48  Q
    |||||||||||  |||||||||||| |||||||||||||||    
T  8849389 ttaacacaccccctcacgaccaacactattgggtttggttc 8849349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 35819018 - 35819137
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagact 120  Q
    |||| |||| || ||||||| |||||||||||||||| | | |||||||| || ||||| |||||| ||||||| ||  ||||| ||||||| |||||||    
T  35819018 tcacaaccagcactattgggcttggttcgtggacataaatggtgggtgacccgatagcggaaacctgatagcaggtggcccaatggatcttagagagact 35819117  T
Q  121 ttgataccatcttaaaaatc 140  Q
     |||| ||||||||||||||    
T  35819118 ctgatgccatcttaaaaatc 35819137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 6218411 - 6218279
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| ||||||| || ||||| | ||||||||||  | ||||| |||||| |||| || ||||||||| ||    
T  6218411 ttaacacaccccctcacgaccagcactattgggcttggttcttgtacataaatgatgggtgacctgatagcggaaacctgatagtaggtgatccaatgga 6218312  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||||||||||| |||||    
T  6218311 tcttggagaggctctgataccatcttagaaatc 6218279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 28245638 - 28245770
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||||| |||||||||| || ||||||| |||||||||||||||| | | |||||| | || ||||| |||||| ||||||| ||  ||||| ||    
T  28245638 ttaacacaccccatcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagcaggtggcccaatgga 28245737  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||||||| ||| |||||    
T  28245738 tcttggagaggctctgataccatattagaaatc 28245770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 35796854 - 35796985
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||| ||| | | |||||| | || ||||| |||||| ||||||| |  |||||| ||    
T  35796854 ttaacacaccccctcacgaccagcactattgggcttggttcgtggagataaatggtgggtggcccgatagcggaaacctgatagcaggtagtccaatgga 35796953  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    |||  ||||| || ||||||||||||| ||||    
T  35796954 tctcgaagaggctctgataccatcttagaaat 35796985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 21750154 - 21750283
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  |||||||||  |||||||| ||||||||||||||||| ||| ||| |||| |  | ||| ||| |  ||||||  |||||||||  |    
T  21750154 ttaacacaccccctcacgaccagtattattggatttggttcgtggacataaacggtggatgacccatttgcggaaatcagatagcatgtgatccaatgaa 21750253  T
Q  108 tcttaaagagactttgataccatcttaaaa 137  Q
    | |||||||| || ||||||||||||||||    
T  21750254 ttttaaagaggctctgataccatcttaaaa 21750283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 32002487 - 32002399
Alignment:
Q  50 tggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagactttgataccatcttaaaaat 139  Q
    |||||||||| | || |||||||| ||||| |||||| ||||||||||| ||||||||||||  ||||  | ||||||||||||||||||    
T  32002487 tggacatagatggtgcgtgactcgatagcggaaacctgatagcagatga-ccaatagatcttggagaggttctgataccatcttaaaaat 32002399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 5398323 - 5398425
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||| | | ||||||   || ||| | |||||| ||||||||||| ||| | ||    
T  5398323 ttaacacacccc-tcacgaccaacattattgggcttggttcgtggacataaatggtgggtggtccgataggggaaacctgatagcagatgacccattgga 5398421  T
Q  108 tctt 111  Q
    ||||    
T  5398422 tctt 5398425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 50543442 - 50543576
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaata-- 105  Q
    |||||||||||  |||||||||||| ||||||| |||||||||||||||| | | |||||| | || || || |||||| ||||||| || || ||||      
T  50543442 ttaacacaccccctcacgaccaacactattgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggtcaaatatg 50543541  T
Q  106 gatcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||||  |||| || ||||| ||||||| |||||    
T  50543542 gatcttggagaggctctgatatcatcttagaaatc 50543576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 4645836 - 4645716
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagact 120  Q
    |||||||||||| | ||||| ||| ||||||||||||   | |||||| | || ||||| |||||| ||||||| ||| ||||| ||||||  |||| ||    
T  4645836 tcacgaccaacacttttgggcttgattcgtggacataattggtgggtggcccgatagcggaaacctgatagcaggtgacccaatggatctttgagaggct 4645737  T
Q  121 ttgataccatcttaaaaatca 141  Q
     |||||| |||||| ||||||    
T  4645736 ctgatactatcttataaatca 4645716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 43743191 - 43743129
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgac 70  Q
    ||||||||| |  |||| |||| ||||||||||||||||||||||||||| | |||| |||||    
T  43743191 ttaacacactccctcacaaccagcattattgggtttggttcgtggacataaatgatgagtgac 43743129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 17412539 - 17412417
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||||| ||||||||||||| ||||||| ||| |||||||||||| | |||||||| |||| || |||||| || ||||||  ||||| ||| ||    
T  17412539 ttaacacaccccatcacgaccaacactattgggcttgattcgtggacataaatgatgggtggctcgataacgaaaatctgatagcaagtgatctaatgga 17412440  T
Q  108 tcttaaagagactttgataccat 130  Q
    |||| ||||| || | |||||||    
T  17412439 tcttgaagaggctctaataccat 17412417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 4112652 - 4112783
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||| |||  |||||||||||| ||||||| ||||||||| |||||| | | ||||||  ||| ||||| |||||| ||||||| || |||||| ||    
T  4112652 ttaacaccccccctcacgaccaacactattgggcttggttcgttgacataaatggtgggtggttcgatagcggaaacctgatagcaggtggtccaatgga 4112751  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    ||||  |||| || ||||||||||||| ||||    
T  4112752 tcttggagaggctctgataccatcttagaaat 4112783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 27413554 - 27413422
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||| |||||||||||| ||||||| ||| |||||||||||| | | |||||| | || ||||| ||| || ||| ||| || || ||||||    
T  27413554 ttaacacaccctctcacgaccaacactattgggcttgattcgtggacataaatggtgggtggcccgatagcggaaatctgataacaggtggtctaataga 27413455  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||| ||||||| |||||    
T  27413454 tcttggagaggctctgatatcatcttagaaatc 27413422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 4098293 - 4098412
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagact 120  Q
    |||||||||||||||||||| |||||||||||||||| | | |||||| | || ||||  |||||| || |||| ||  ||||| |||||| ||||| ||    
T  4098293 tcacgaccaacattattgggcttggttcgtggacataaagggtgggtggcccgatagcagaaacctgattgcaggtggcccaatggatcttgaagagtct 4098392  T
Q  121 ttgataccatcttaaaaatc 140  Q
     |||||||| |||| |||||    
T  4098393 ctgataccaacttagaaatc 4098412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 7307928 - 7307797
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||| ||||||  |||||||||||| |||||| ||||||||||||||||| | | ||||||   |  ||||| |||||| |||||||| || ||||| ||    
T  7307928 ttaatacaccccctcacgaccaacactattggatttggttcgtggacataaatggtgggtggtccaatagcggaaacctgatagcagacgacccaatgga 7307829  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    |||| ||| |||| ||||| ||||||| ||||    
T  7307828 tcttgaagtgactatgatatcatcttagaaat 7307797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 369839 - 369734
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtga-ctcgctagcgaaaacctaatagcagatgatccaatag 106  Q
    |||||||| ||  ||||||||| || ||||||| |||||||||||||||| | | ||||||| | || ||||| |||||| ||||||| ||||||||| |    
T  369839 ttaacacatcccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtgaccccgatagcggaaacctgatagcagctgatccaatgg 369740  T
Q  107 atctta 112  Q
    ||||||    
T  369739 atctta 369734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 35772236 - 35772104
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  |||| |||  || ||||||| |||||||||||||||| | | |||||| | || ||||| |||||| ||||||||||  ||||| ||    
T  35772236 ttaacacacccgctcacaaccggcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagcagatggcccaatgga 35772137  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    |||| |  || || ||||||||||||| |||||    
T  35772136 tcttgagaaggctctgataccatcttagaaatc 35772104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 38668332 - 38668201
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| ||||||| |||||||| | ||| |||||| || ||||  |||||| ||| ||| ||| ||||| ||    
T  38668332 ttaacacacccactcacgaccagcaatattgggcttggttcatggacataaatgataggtgacccgatagcagaaacctgataacaggtgacccaatgga 38668233  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    || |  |||| || ||||||||||||| ||||    
T  38668232 tcatggagaggctctgataccatcttagaaat 38668201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 2859517 - 2859635
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagact 120  Q
    ||||||||| || ||||||| |||||||||||||||| | | |||||| | || ||||  ||||||||||| || ||  ||||| |||||| ||||| ||    
T  2859517 tcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcagaaacctaatagaaggtggcccaatggatcttgaagaggct 2859616  T
Q  121 ttgataccatcttaaaaat 139  Q
     | ||||||||||| ||||    
T  2859617 ctaataccatcttagaaat 2859635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 25713365 - 25713262
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||| |||  |||||||||||| ||||||| |||||||||||||||| | | |||||| | || ||||| |||| | ||||||| ||  ||||| ||    
T  25713365 ttaacaccccccctcacgaccaacactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacttgatagcaggtggcccaatgga 25713266  T
Q  108 tctt 111  Q
    ||||    
T  25713265 tctt 25713262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 8870801 - 8870850
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||||||||||  ||||||||| ||  |||||||||||||||||||||||    
T  8870801 ttaacacaccccctcacgaccagcacaattgggtttggttcgtggacata 8870850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 12325409 - 12325458
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    ||||||||| |  |||||||||||| ||||||| ||||||||||||||||    
T  12325409 ttaacacacaccctcacgaccaacactattgggcttggttcgtggacata 12325458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 12376550 - 12376599
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    ||||||||| |  |||||||||||| ||||||| ||||||||||||||||    
T  12376550 ttaacacacaccctcacgaccaacactattgggcttggttcgtggacata 12376599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 38733291 - 38733226
Alignment:
Q  75 tagcgaaaacctaatagcagatgatccaatagatcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||| |||||| ||||||| || |||||| ||||||  ||||||| ||||||||||||| |||||    
T  38733291 tagcggaaacctgatagcaggtggtccaatggatcttggagagactctgataccatcttagaaatc 38733226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 40524789 - 40524874
Alignment:
Q  45 gttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagactttgataccat 130  Q
    ||||||||||||| ||| ||||||    | |||||||||| | ||||||||||| ||||| |||||| ||||| || |||||||||    
T  40524789 gttcgtggacataaacggtgggtggtctgatagcgaaaacttgatagcagatgaaccaatggatcttgaagaggctctgataccat 40524874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 2029976 - 2029844
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | ||||||   || ||||| |||||||||||||| ||  ||||| ||    
T  2029976 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctaatagcaggtggcccaatgga 2029877  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||||||||||| |||||    
T  2029876 tcttggagaggctctgataccatcttagaaatc 2029844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 16419474 - 16419342
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||| | |||||||||||||||| | | |||||| |||| ||||| |||||| ||||||| ||  ||||| ||    
T  16419474 ttaacacaccccctcacgaccagcactattgagcttggttcgtggacataaatggtgggtggctcgatagcggaaacctgatagcaggtggcccaatgga 16419375  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||||||||||| |||||    
T  16419374 tcttggagaggctctgataccatcttagaaatc 16419342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 33606166 - 33606298
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||||   ||||||||| || |||| || |||||||||||||||| | | |||||| |  | ||||| |||||| ||||||  ||| ||||||||    
T  33606166 ttaacacaccacctcacgaccatcactattaggcttggttcgtggacataaatggtgggtggcctgatagcggaaacctgatagcaagtgacccaataga 33606265  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    |||| |||||||||||||| ||||||| |||||    
T  33606266 tcttgaagagactttgatatcatcttagaaatc 33606298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 16533519 - 16533397
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||| ||||||||| || ||||||  |||||||||||||||| | | |||||| | || |||||||||||| ||||||| |   ||||| ||    
T  16533519 ttaacacaccctctcacgaccagcactattggccttggttcgtggacataaatggtgggtggcccgatagcgaaaacctgatagcaggtagcccaatgga 16533420  T
Q  108 tcttaaagagactttgataccat 130  Q
    |||| ||||| || |||||||||    
T  16533419 tcttgaagaggctctgataccat 16533397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 15124660 - 15124792
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||| ||  |||| |||| || ||||||  |||||||||||||||| | | ||| |||| || || ||||||||| ||||||| || |||||| ||    
T  15124660 ttaacacatcccctcacaaccagcactattggacttggttcgtggacataaatggtggatgacccgataacgaaaacctgatagcaggtggtccaatgga 15124759  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  ||||||| ||||||||||||| |||||    
T  15124760 tcttggagagactctgataccatcttagaaatc 15124792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 44404038 - 44404162
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgcta-gcgaaaacctaatagcagatgatccaatag 106  Q
    ||||||||||| ||||||||||||| ||||||| ||||||| |||||||| |   |||||||| || || ||| |||||| ||||||| || |||||| |    
T  44404038 ttaacacaccccatcacgaccaacactattgggcttggttcatggacataaatagtgggtgacccgataggcggaaacctgatagcaggtggtccaatgg 44404137  T
Q  107 atcttaaagagact-ttgataccat 130  Q
    |||||  ||||||| ||||||||||    
T  44404138 atcttggagagactcttgataccat 44404162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 14466287 - 14466418
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||| | || ||||| |||||| ||| ||  ||  ||||| ||    
T  14466287 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgataacaagtggcccaatgga 14466386  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    ||||  |||| || ||||||||||||| ||||    
T  14466387 tcttggagaggctctgataccatcttagaaat 14466418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 37812380 - 37812483
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| |||||||||| |||||||||||||||| ||  |||||| | || ||||  |||||| ||||||| ||  ||||| ||    
T  37812380 ttaacacaccccctcacgaccagcattattgggcttggttcgtggacataaacagtgggtggcccgatagcagaaacctgatagcaggtggcccaatgga 37812479  T
Q  108 tctt 111  Q
    ||||    
T  37812480 tctt 37812483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 33381078 - 33381130
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcg 73  Q
    ||||||||| || || ||||||||||||||||||||| | |||||||||||||    
T  33381078 tcacgaccagcactactgggtttggttcgtggacataaatgatgggtgactcg 33381130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 36352038 - 36352167
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||||| ||||||||||||| ||||||| || ||||||||  ||| | | |||||| | || || || |||||| ||| ||| ||  || || ||    
T  36352038 ttaacacaccccatcacgaccaacactattgggcttcgttcgtgg--ataaatggtgggtggcccgataacggaaacctgataacaggtggcccgatgga 36352135  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    |||| |||||||| | ||||||||||||||||    
T  36352136 tcttgaagagactctaataccatcttaaaaat 36352167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 5711551 - 5711646
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaa 103  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||| | || || || |||||| ||||||| || |||||    
T  5711551 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggtccaa 5711646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 7748179 - 7748068
Alignment:
Q  31 cattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaag-agactttgatacca 129  Q
    ||||||||| |||||| | | || ||| | ||||| ||||||| || ||||||||| ||||||| ||| ||||  ||| ||| || |||||||||||| |    
T  7748179 cattattggatttggtgcatagatataaatgatggatgactcgataacgaaaacctgatagcaggtgacccaaatgattttagagtagactttgatacaa 7748080  T
Q  130 tcttaaaaatca 141  Q
    ||||||||||||    
T  7748079 tcttaaaaatca 7748068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 17525211 - 17525297
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcag 94  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||| | || ||||| | |||| |||||||    
T  17525211 ttaacacacccactcacgaccatcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggatacctgatagcag 17525297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 36063353 - 36063291
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgac 70  Q
    |||||||||||| | |||| ||||| |||| ||||||||||||||||||| | |||| |||||    
T  36063353 ttaacacacccttttacgatcaacactattaggtttggttcgtggacatatatgatgagtgac 36063291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 5594221 - 5594185
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  5594221 tcacgagcaacattattgggtttggttcatggacata 5594185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 14612 - 14488
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgcta-gcgaaaacctaatagcagatgatccaatag 106  Q
    ||||||||||| ||||||||||||| ||||||| ||||||| |||||||| |   |||||||| || || ||| |||||| ||||||| || |||||| |    
T  14612 ttaacacaccccatcacgaccaacactattgggcttggttcatggacataaatagtgggtgacccgataggcggaaacctgatagcaggtggtccaatgg 14513  T
Q  107 atcttaaagagact-ttgataccat 130  Q
    |||||  ||||||| ||||||||||    
T  14512 atcttggagagactcttgataccat 14488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 10946 - 10822
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgcta-gcgaaaacctaatagcagatgatccaatag 106  Q
    ||||||||||| ||||||||||||| ||||||| ||||||| |||||||| |   |||||||| |  || ||| |||||| ||||||| || |||||| |    
T  10946 ttaacacaccccatcacgaccaacactattgggcttggttcatggacataaatagtgggtgacccaataggcggaaacctgatagcaggtggtccaatgg 10847  T
Q  107 atcttaaagagact-ttgataccat 130  Q
    |||||  ||||||| ||||||||||    
T  10846 atcttggagagactcttgataccat 10822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 30849315 - 30849411
Alignment:
Q  44 ggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagactttgataccatcttaaaaatc 140  Q
    |||||||||||||| | | || ||| |||  ||||| |||||||||||||| || |||||| |||||||||| |||||||||| ||||||| |||||    
T  30849315 ggttcgtggacataaatggtgagtggctcattagcggaaacctaatagcaggtggtccaatggatcttaaagggactttgatatcatcttagaaatc 30849411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 13353408 - 13353277
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||| | || ||||| |||||| ||| ||| ||  ||||| ||    
T  13353408 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgataacaggtggcccaatgga 13353309  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    ||||  |||| || ||||||||||||| ||||    
T  13353308 tcttggagaggctctgataccatcttagaaat 13353277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 33796533 - 33796402
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||| | || ||||| |||||| ||| ||| ||  ||||| ||    
T  33796533 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgataacaggtggcccaatgga 33796434  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    ||||  |||| || ||||||||||||| ||||    
T  33796433 tcttggagaggctctgataccatcttagaaat 33796402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 6542820 - 6542945
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||| |  |||||||||||  ||||||  |||||||||||||||| | | |||||||| || || || |||||| ||||||  ||| ||||| ||    
T  6542820 ttaacacacaccctcacgaccaacgatattggacttggttcgtggacataaatggtgggtgacccgataacggaaacctgatagcaagtgacccaatgga 6542919  T
Q  108 tcttaaagagactttgataccatctt 133  Q
    |||| ||||| || ||||||||||||    
T  6542920 tcttgaagaggctctgataccatctt 6542945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 6400732 - 6400863
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||| |||  ||||||||| || ||||||| |||||||||||||||| | | ||||||   || ||||  |||||| ||||||| ||| || |||||    
T  6400732 ttaacaccccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatagcagaaacctgatagcaggtga-cccataga 6400830  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    | ||  |||| ||||||||||||||||||||||    
T  6400831 ttttggagaggctttgataccatcttaaaaatc 6400863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 12330056 - 12330188
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  ||||||||| ||| |||||| |||||||||||||||| | | |||||| | || | ||| |||||| ||||||| ||  ||||| ||    
T  12330056 ttaacacaccccctcacgaccagcataattgggcttggttcgtggacataaatggtgggtggcccgatggcggaaacctgatagcaggtggcccaatgga 12330155  T
Q  108 tcttaaagagactttgataccatcttaaaaatc 140  Q
    ||||  |||| || ||||||||| ||| |||||    
T  12330156 tcttggagaggctctgataccatattagaaatc 12330188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 33494746 - 33494615
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    ||||||||||   ||||||||| || ||||||| |||||||||| ||||| ||| |||||| | || ||| | |||||| ||||||| ||| ||||| ||    
T  33494746 ttaacacaccaactcacgaccagcactattgggcttggttcgtgaacataaacggtgggtggcccgatagtggaaacctgatagcaggtgacccaatgga 33494647  T
Q  108 tcttaaagagactttgataccatcttaaaaat 139  Q
    |||  |||||  | ||||||||||||| ||||    
T  33494646 tctcgaagaggttctgataccatcttagaaat 33494615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 3680206 - 3680088
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagact 120  Q
    |||||||||||| ||||||| |||||| ||||||||| | | ||| |||| || ||||| |||||||||||||| ||| || || ||| ||  ||||  |    
T  3680206 tcacgaccaacactattgggcttggtttgtggacataaatggtggatgacccgatagcggaaacctaatagcaggtgacccgatggattttggagagggt 3680107  T
Q  121 ttgataccatcttaaaaat 139  Q
     ||||||||||||| ||||    
T  3680106 ctgataccatcttagaaat 3680088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 17147772 - 17147894
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||||||||  |||| |||| || ||||||| |||||||||||||||| | | ||||||||  | ||||| |||||| ||||||| ||| ||||| ||    
T  17147772 ttaacacaccccctcacaaccagcactattgggcttggttcgtggacataaatggtgggtgacctgatagcggaaacctgatagcaggtgacccaatgga 17147871  T
Q  108 tcttaaagagactttgataccat 130  Q
    | ||  |||| || |||||||||    
T  17147872 tgttggagaggctctgataccat 17147894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 20830720 - 20830615
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaataga 107  Q
    |||||| || || |||||||||  ||||||||| |||||||||||| ||| | |||||||||  || |||| ||||||| ||||||||| | | ||| ||    
T  20830720 ttaacatacactctcacgaccagtattattgggcttggttcgtggaaataaatgatgggtgatccgatagcaaaaacctgatagcagataacctaatgga 20830621  T
Q  108 tcttaa 113  Q
    ||||||    
T  20830620 tcttaa 20830615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 4868689 - 4868775
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcag 94  Q
    |||||||||||  ||||||||| || ||||||| |||||||||||||||| | | |||||| | || || || |||||| |||||||    
T  4868689 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcag 4868775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 7638759 - 7638828
Alignment:
Q  42 ttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatctt 111  Q
    ||||||||| |||||| | |||||||||   | ||||| |||||| ||||||| ||||||||||||||||    
T  7638759 ttggttcgtagacataaatgatgggtgatctgatagcggaaacctgatagcaggtgatccaatagatctt 7638828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 34345604 - 34345555
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacata 57  Q
    |||||||||||  ||| |||||||| ||||| ||||||||||||||||||    
T  34345604 ttaacacaccccctcatgaccaacactattgtgtttggttcgtggacata 34345555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 33631695 - 33631815
Alignment:
Q  21 tcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaagagact 120  Q
    ||||||||| || ||||| | |||||| ||||||||| | | |||||| | || ||||  |||||| ||| ||| ||| ||||||||||||  |||  ||    
T  33631695 tcacgaccagcactattgagcttggttagtggacataaatggtgggtgtcccgatagcagaaacctgatatcaggtgacccaatagatcttggagatgct 33631794  T
Q  121 ttgataccatcttaaaaatca 141  Q
     ||||| ||||||||||||||    
T  33631795 ctgatatcatcttaaaaatca 33631815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 5862 - 5730
Alignment:
Q  8 ttaacacaccctatcacgaccaacattatt-gggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatag 106  Q
    |||||||||||  ||||||||| ||||||| ||| ||||||||||| |||| ||| ||||||| ||| || || |||||| ||||||| ||  ||||| |    
T  5862 ttaacacacccc-tcacgaccagcattatttgggcttggttcgtgggcataaacggtgggtgattcgataacggaaacctgatagcaggtggcccaatgg 5764  T
Q  107 atcttaaagagactttgataccatcttaaaaatc 140  Q
    || || ||||| || ||||||||||||| |||||    
T  5763 attttgaagaggctctgataccatcttagaaatc 5730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 13305 - 13181
Alignment:
Q  8 ttaacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgcta-gcgaaaacctaatagcagatgatccaatag 106  Q
    ||||||||||| ||||||||||||| ||||||| ||||||| |||||||| |   |||||||| |  || ||| |||||| ||||||| || |||||| |    
T  13305 ttaacacaccccatcacgaccaacactattgggcttggttcatggacataaatagtgggtgacccaataggcggaaacctgatagcaggtggtccaatgg 13206  T
Q  107 atcttaaagagact-ttgataccat 130  Q
    |||||  ||||||| ||||||||||    
T  13205 atcttggagagactcttgataccat 13181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 5633 - 5763
Alignment:
Q  10 aacacaccctatcacgaccaacattattgggtttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatc 109  Q
    |||||||||  ||||||||| || ||||||| |||||||||||||||| | | ||||||   || ||||| |||||| ||||||| ||   |||| ||||    
T  5633 aacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatagcaggtggctcaatggatc 5732  T
Q  110 ttaaagagactttgataccatcttaaaaatc 140  Q
    ||  |||| || ||||||||||||| |||||    
T  5733 ttggagaggctctgataccatcttagaaatc 5763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 5802 - 5728
Alignment:
Q  42 ttggttcgtggacatagacgatgggtgactcgctagcgaaaacctaatagcagatgatccaatagatcttaaaga 116  Q
    |||||||||||||||| | ||| |||| |||| ||||||||| || ||||||| ||| |||||||||||| ||||    
T  5802 ttggttcgtggacataaatgataggtggctcgatagcgaaaatctgatagcaggtgacccaatagatcttgaaga 5728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University