View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5634_high_1 (Length: 607)
Name: NF5634_high_1
Description: NF5634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5634_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 33186474 - 33186848
Alignment:
| Q |
1 |
aggtgattgctctgtcaccaacaacgttgttggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33186474 |
aggtgattgctctgtcaccaacaacgttgttagctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactaca |
33186573 |
T |
|
| Q |
101 |
tagaagaggacataatctaccatggaaactgagacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33186574 |
tagaagaggacataatctaccatggaaactgagacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcat |
33186673 |
T |
|
| Q |
201 |
gatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33186674 |
gatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaat |
33186773 |
T |
|
| Q |
301 |
atgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtgattgtggaaccg |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33186774 |
atgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtgattgtggaaccg |
33186848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 63 - 374
Target Start/End: Complemental strand, 5789048 - 5788737
Alignment:
| Q |
63 |
aacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaactgagacaaagatcaagtaaagaaattaggaaaa |
162 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || |||||||| |||||| |||||||||| ||| ||||||| |||||||||| ||||| || | |
|
|
| T |
5789048 |
aacaaagggtttcaaagagatcaaaatcttcaacttcacagaagaggtcataatttaccatggaagttgaaacaaagaacaagtaaagagattagaaaga |
5788949 |
T |
|
| Q |
163 |
gggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatgg |
262 |
Q |
| |
|
|| ||||| ||||| ||||| |||||||| ||||||||||| || ||||| ||||| ||||| ||||| || || || ||||||| ||||| ||||| |
|
|
| T |
5788948 |
aagtatatgtatgtccagaaccaacttgtgtgcatcatgatccatcaagagcattaggggatttgactggaatcaagaaacacttttccagaaagcatgg |
5788849 |
T |
|
| Q |
263 |
tgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgt |
362 |
Q |
| |
|
|||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| || ||| |||||| ||||||| |||| |||| |
|
|
| T |
5788848 |
tgagaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgt |
5788749 |
T |
|
| Q |
363 |
gattgtggaacc |
374 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
5788748 |
gactgtggaacc |
5788737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 502 - 592
Target Start/End: Original strand, 33186975 - 33187065
Alignment:
| Q |
502 |
aaggagggatagttttatcacacatagagctttttgtgatgcgttggcagaggagaatgcaaaatctcagaatcaagctgttgggaaagct |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33186975 |
aaggagggatagttttatcacacatagagctttttgtgatgcgttggcagaggagaatgcaaaatctcagaatcaagctgttgggaaagct |
33187065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 5e-73; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 31 - 374
Target Start/End: Original strand, 36989109 - 36989452
Alignment:
| Q |
31 |
tggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaact |
130 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| || ||||||||||| || ||||||||||| || |||||||||| || | || ||||| || |
|
|
| T |
36989109 |
tggctacaaacagattcgtatgtgaaatatgtaacaagggttttcaaagagaccaaaatcttcaactgcaccgaagaggacacaacttgccttggaagct |
36989208 |
T |
|
| Q |
131 |
gagacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaact |
230 |
Q |
| |
|
| ||||||| | ||| ||||||||| || |||||||||||||||||||||||| | ||||| || ||| | ||| | ||||| | |||||| | ||| |
|
|
| T |
36989209 |
aaaacaaagaactagtgcagaaattagaaagagggtttatgtttgtcctgaaccttcatgtgtacaccataaccctgcaagagcacttggtgatcttact |
36989308 |
T |
|
| Q |
231 |
gggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcact |
330 |
Q |
| |
|
|| || |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36989309 |
ggaattaaaaagcacttttgtagaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcatt |
36989408 |
T |
|
| Q |
331 |
ctaaagtttgtggttctagagagtataaatgtgattgtggaacc |
374 |
Q |
| |
|
| ||| | |||||| | || || || |||||||| ||||||||| |
|
|
| T |
36989409 |
ccaaaatatgtggtacaagggaatacaaatgtgactgtggaacc |
36989452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 31 - 370
Target Start/End: Complemental strand, 12804868 - 12804529
Alignment:
| Q |
31 |
tggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaact |
130 |
Q |
| |
|
|||| |||||||||||||| |||||| | ||| | |||||||||||||| || || ||| | |||||||||||||||||||| ||| | || ||||| || |
|
|
| T |
12804868 |
tggcaacaaacagatttgtatgtgaagtgtgtcaaaaagggtttcaaagggagcaaaatttacaactacatagaagaggacacaatttgccttggaagct |
12804769 |
T |
|
| Q |
131 |
gagacaaa-gatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaac |
229 |
Q |
| |
|
| |||| || || ||||| | || || ||||||| | ||||| ||||| || |||||||| ||||| ||||| || ||| | ||||| | || |
|
|
| T |
12804768 |
aaagcaaaagagtaac-aaagagccaaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcac |
12804670 |
T |
|
| Q |
230 |
tgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcac |
329 |
Q |
| |
|
||| || || |||||||||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12804669 |
tggaattaagaagcacttttctagaaagcatggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcat |
12804570 |
T |
|
| Q |
330 |
tctaaagtttgtggttctagagagtataaatgtgattgtgg |
370 |
Q |
| |
|
||||| ||||||| |||| ||||||| |||||| ||||| |
|
|
| T |
12804569 |
tctaagacttgtggtactagggagtatagatgtgactgtgg |
12804529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 66 - 370
Target Start/End: Original strand, 42286921 - 42287225
Alignment:
| Q |
66 |
aaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaactgagacaaagatcaagtaaagaaattaggaaaaggg |
165 |
Q |
| |
|
|||||||||||||| || || ||||||||||| |||||||||||||| ||||| || ||||| || | |||| || | ||||| |||| || || |
|
|
| T |
42286921 |
aaagggtttcaaagggagcaaaatcttcaacttcatagaagaggacacaatcttccttggaagctaaagcaaaagtccaacaaagagccaaggagaaagg |
42287020 |
T |
|
| Q |
166 |
tttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggtga |
265 |
Q |
| |
|
||||| | |||||||| || || || || ||||| || ||||| ||||||||||| ||| ||||||| || |||||||| || | | | || || ||||| |
|
|
| T |
42287021 |
tttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagcacggtga |
42287120 |
T |
|
| Q |
266 |
gaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtgat |
365 |
Q |
| |
|
||| |||||||||||||| ||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||||| ||||||| |||| ||||||| |
|
|
| T |
42287121 |
gaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagatgtgat |
42287220 |
T |
|
| Q |
366 |
tgtgg |
370 |
Q |
| |
|
||||| |
|
|
| T |
42287221 |
tgtgg |
42287225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 31 - 328
Target Start/End: Complemental strand, 28496466 - 28496166
Alignment:
| Q |
31 |
tggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaact |
130 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| || || |||||||| || |
|
|
| T |
28496466 |
tggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactacatagaagaggacacaaccttccatggaagct |
28496367 |
T |
|
| Q |
131 |
gagacaaagatcaagtaaagaaattaggaaaagg---gtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgattta |
227 |
Q |
| |
|
||||| ||||| | ||||| ||| || | | ||||| | ||||| || || ||||| || ||||| ||||| ||||| | ||||| | |
|
|
| T |
28496366 |
tagacagagatccaacaaagatgttatcaagaagaaagtttacatctgtccagagaagacctgtgtccaccatgacccttcaagagcacttggtgacctc |
28496267 |
T |
|
| Q |
228 |
actgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctc |
327 |
Q |
| |
|
|| || ||||||||||||||| ||||||| || |||||||| |||||||||||||| |||||||| || |||||||| || ||||||||||||||||||| |
|
|
| T |
28496266 |
acaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctc |
28496167 |
T |
|
| Q |
328 |
a |
328 |
Q |
| |
|
| |
|
|
| T |
28496166 |
a |
28496166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 36 - 370
Target Start/End: Complemental strand, 31644413 - 31644076
Alignment:
| Q |
36 |
acaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaactgagac |
135 |
Q |
| |
|
||||| |||||||||||||| || || ||||| || |||||||||||||| || || || |||||||| ||||||||||| ||||||||||| ||| | |
|
|
| T |
31644413 |
acaaatagatttgtgtgtgagatctgcaacaagggttttcaaagagatcaaaacctacagctacataggagaggacataacctaccatggaagttgaagc |
31644314 |
T |
|
| Q |
136 |
aaag-atcaagtaaagaaattaggaaaagg---gtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactg |
231 |
Q |
| |
|
|||| | ||| ||||| ||| |||| | | |||||||||||| || ||| | |||||||||||| | ||||| || ||| | || ||| | || | |
|
|
| T |
31644313 |
aaaggaacaac-aaagatgttattaaaaagagagcttatgtttgtccagagccttcatgtgttcatcataacccttcaagggctcttggagatcttacag |
31644215 |
T |
|
| Q |
232 |
ggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactc |
331 |
Q |
| |
|
| || || || || | | |||||||||||||||||||||| ||||||||||| || || || |||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
31644214 |
gaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactc |
31644115 |
T |
|
| Q |
332 |
taaagtttgtggttctagagagtataaatgtgattgtgg |
370 |
Q |
| |
|
|||| |||||| || |||| ||||||||||||||||| |
|
|
| T |
31644114 |
taaaacctgtggtactcgagaatataaatgtgattgtgg |
31644076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 164 - 370
Target Start/End: Original strand, 12774839 - 12775045
Alignment:
| Q |
164 |
ggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggt |
263 |
Q |
| |
|
||||||| | ||||| ||||| || |||||||| ||||| ||||| || ||| | ||||| | ||||| || || || |||| || |||||| |||||| |
|
|
| T |
12774839 |
ggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactattttagaaagcatggt |
12774938 |
T |
|
| Q |
264 |
gagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtg |
363 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||| ||||| |
|
|
| T |
12774939 |
gagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtg |
12775038 |
T |
|
| Q |
364 |
attgtgg |
370 |
Q |
| |
|
| ||||| |
|
|
| T |
12775039 |
actgtgg |
12775045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 168 - 374
Target Start/End: Original strand, 4160283 - 4160489
Alignment:
| Q |
168 |
tatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggtgaga |
267 |
Q |
| |
|
||||||||||| || || || |||||||| ||||| ||||| || || | ||||| ||||||| || || |||||||||| || || || ||||||| |
|
|
| T |
4160283 |
tatgtttgtccagagccaacatgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacggtgaga |
4160382 |
T |
|
| Q |
268 |
aaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtgattg |
367 |
Q |
| |
|
| |||||||| ||||||||||||||||| |||||| ||||| || |||||||||||||| || ||| ||||||| ||| ||||||||| ||||| || |
|
|
| T |
4160383 |
agaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactg |
4160482 |
T |
|
| Q |
368 |
tggaacc |
374 |
Q |
| |
|
||||||| |
|
|
| T |
4160483 |
tggaacc |
4160489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 50788952 - 50788885
Alignment:
| Q |
255 |
aaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaa |
322 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||||||||||| |
|
|
| T |
50788952 |
aaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaa |
50788885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 4160142 - 4160239
Alignment:
| Q |
30 |
ttggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaa |
127 |
Q |
| |
|
||||| |||||||| || | ||||| || ||||||||||| |||||||||||||| |||||||| || |||| |||||||||||| | |||||||| |
|
|
| T |
4160142 |
ttggcaacaaacaggttcatttgtgagatttgtaacaaaggttttcaaagagatcaaaatcttcagcttcataagagaggacataatttgccatggaa |
4160239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 28495876 - 28495821
Alignment:
| Q |
508 |
ggatagttttatcacacatagagctttttgtgatgcgttggcagaggagaatgcaa |
563 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| |||||||| |||| ||||| |
|
|
| T |
28495876 |
ggatagtttcattacacatagagccttttgtgatgcattggcagaagagagtgcaa |
28495821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 12774706 - 12774787
Alignment:
| Q |
31 |
tggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggaca |
112 |
Q |
| |
|
|||| |||||||||||||| |||||| | || | |||||||| ||||| || || ||| | |||||||||||||||||||| |
|
|
| T |
12774706 |
tggcaacaaacagatttgtatgtgaagtgtgccaaaaagggttccaaagggagcaaaatttacaactacatagaagaggaca |
12774787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 15 - 370
Target Start/End: Complemental strand, 38896230 - 38895875
Alignment:
| Q |
15 |
tcaccaacaacgttgttggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacata |
114 |
Q |
| |
|
||||||| ||| ||| |||| ||||||||||| ||||||||||| ||| || | |||||||| ||||| ||||||||||| ||| || | ||||||| |
|
|
| T |
38896230 |
tcaccaaaaacattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatcaaaatcttcaacttcatcgacgtggacata |
38896131 |
T |
|
| Q |
115 |
atctaccatggaaactgagacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagc |
214 |
Q |
| |
|
| ||||| ||||| |||| ||||||| ||||||||||||| ||||| || || ||||| ||||| || || ||||||||| || ||||||| || || |
|
|
| T |
38896130 |
acctaccttggaagctgaaacaaagaacaagtaaagaaataaggaagagagtgtatgtgtgtccagagaagacatgtgttcataatcatccttcaagggc |
38896031 |
T |
|
| Q |
215 |
tttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatct |
314 |
Q |
| |
|
||| || ||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |||||||| || || || |||||||||||||| |
|
|
| T |
38896030 |
tttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgagaagtgctcaaaattttatgctgttcaatcg |
38895931 |
T |
|
| Q |
315 |
gattggaaagctcactctaaagtttgtggttctagagagtataaatgtgattgtgg |
370 |
Q |
| |
|
||||||||||| ||||| || ||||||| ||||||| || |||||||||||||| |
|
|
| T |
38895930 |
gattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgtgg |
38895875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 51 - 331
Target Start/End: Original strand, 42898087 - 42898367
Alignment:
| Q |
51 |
tgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaactgagacaaagatcaagtaaag |
150 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||||||||||||| |||| ||||||||| ||| | |||||||| ||| |||||| |||| || | |
|
|
| T |
42898087 |
tgtgagatctgtaacaaaggatttcaaagagatcagaatcttcaacttcataaaagaggacacaatttgccatggaagttgaagcaaagaacaagcaatg |
42898186 |
T |
|
| Q |
151 |
aaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttg |
250 |
Q |
| |
|
| || ||||| | |||||||| ||||| ||||| |||||||| || ||||| || || ||||| || || || ||||||| || || |||||||| || |
|
|
| T |
42898187 |
agataaggaagaaagtttatgtgtgtccagaaccaacttgtgtgcaccatgacccatcaagagccttgggggacctaactggtatcaagaagcacttctg |
42898286 |
T |
|
| Q |
251 |
tagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactc |
331 |
Q |
| |
|
||||| || |||||||| |||||||||||||| || || |||||||| ||||| |||||||| || |||||||||||||| |
|
|
| T |
42898287 |
cagaaagcacggtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactc |
42898367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 231 - 370
Target Start/End: Original strand, 40040758 - 40040897
Alignment:
| Q |
231 |
gggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcact |
330 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||| |||||||| ||||| || ||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
40040758 |
gggataaaaaagcactttagtagaaagcacggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcata |
40040857 |
T |
|
| Q |
331 |
ctaaagtttgtggttctagagagtataaatgtgattgtgg |
370 |
Q |
| |
|
||| ||||||| ||| |||||| | |||||||||||| |
|
|
| T |
40040858 |
gtaagatttgtggcactaaagagtacagatgtgattgtgg |
40040897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 274
Target Start/End: Complemental strand, 5435773 - 5435530
Alignment:
| Q |
31 |
tggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaact |
130 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||| || | |||||||| ||||| ||||||||||| ||| || | |||||||| ||||| ||||| || |
|
|
| T |
5435773 |
tggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatcaaaatcttcaacttcatcgacgtggacataacctaccttggaagct |
5435674 |
T |
|
| Q |
131 |
gagacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaact |
230 |
Q |
| |
|
|| ||||||| |||||||| |||| ||||| || || ||||| ||||| || | |||||||| || ||||||| || ||||| || |||||||| |
|
|
| T |
5435673 |
gaaacaaagaacaagtaaaaaaataaggaagagagtgtatgtgtgtccagagaaaatccgtgttcataatcatccttcaagggctttgggagatttaaca |
5435574 |
T |
|
| Q |
231 |
gggataaaaaagcacttttgtagaaaacatggtgagaaaaagtg |
274 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||| ||||| |
|
|
| T |
5435573 |
gggataaagaagcacttttgtaggaagcacggtgagaagaagtg |
5435530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 31 - 373
Target Start/End: Complemental strand, 30518505 - 30518163
Alignment:
| Q |
31 |
tggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaact |
130 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||| |||||||||||||| ||||||||||| |||||| | ||||||||||| |||||||| || |
|
|
| T |
30518505 |
tggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagct |
30518406 |
T |
|
| Q |
131 |
gagacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaact |
230 |
Q |
| |
|
| || ||| ||| |||||||| | ||| || |||||||| ||||| || |||||||| || ||||||||||| || || | ||||| |||||| |
|
|
| T |
30518405 |
taagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaact |
30518306 |
T |
|
| Q |
231 |
gggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcact |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || |||||||| |||||||| || || || ||||||||||| || |||||||||||||||| |
|
|
| T |
30518305 |
gggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcact |
30518206 |
T |
|
| Q |
331 |
ctaaagtttgtggttctagagagtataaatgtgattgtggaac |
373 |
Q |
| |
|
| ||| |||||| ||||||| || |||||||| |||||||| |
|
|
| T |
30518205 |
caaaaacatgtggtactagagaatacaaatgtgactgtggaac |
30518163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 51 - 370
Target Start/End: Complemental strand, 22085846 - 22085524
Alignment:
| Q |
51 |
tgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaactgagacaaagatcaagtaaag |
150 |
Q |
| |
|
|||||||| || ||||| || || |||||||| |||||| | || || ||| | ||||||| || ||||||||||| |||| |||||| ||| |||| |
|
|
| T |
22085846 |
tgtgaaatctgcaacaagggtttccaaagagaccagaatttgcagcttcatcggcgaggacacaacctaccatggaagctgaagcaaagagcaaacaaag |
22085747 |
T |
|
| Q |
151 |
a---aattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcactt |
247 |
Q |
| |
|
| |||| | || | ||||||||| |||||||| |||||||| || ||||| |||||||||||||| || ||||| || || ||||| || || | |
|
|
| T |
22085746 |
atcaaattcgaaagaaggtttatgtgtgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacatta |
22085647 |
T |
|
| Q |
248 |
ttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttct |
347 |
Q |
| |
|
| ||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||| || ||||||| || |
|
|
| T |
22085646 |
tagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaact |
22085547 |
T |
|
| Q |
348 |
agagagtataaatgtgattgtgg |
370 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
22085546 |
agagagtacaaatgtgattgtgg |
22085524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 44151170 - 44150814
Alignment:
| Q |
18 |
ccaacaacgttgttggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatc |
117 |
Q |
| |
|
|||||||| || |||| ||||| |||||||||||||| ||||||||||| || ||||| || || ||||||||||| |||| ||||||| || |||| |
|
|
| T |
44151170 |
ccaacaacattaatggcaacaaatagatttgtgtgtgagatatgtaacaagggttttcagagggaccagaatcttcagttacaccgaagaggtcacaatc |
44151071 |
T |
|
| Q |
118 |
taccatggaaactgagacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagcttt |
217 |
Q |
| |
|
| ||||||||||| || |||||| ||||| ||| | | ||||| ||| ||||| || ||||| || | || ||||| ||| |||| ||| |||| || |
|
|
| T |
44151070 |
ttccatggaaacttaggcaaagaacaagtgcagaggtgaagaaaaaggtgtatgtgtgccctgagccatcatgcgttcaccataatccatctcgagcatt |
44150971 |
T |
|
| Q |
218 |
aggtgatttaactgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgat |
317 |
Q |
| |
|
|||||| | ||||| || ||||| || ||| | | |||||||||||||| || ||||||||||| || || ||||| | ||||||||||||||| ||| |
|
|
| T |
44150970 |
aggtgaccttactggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagat |
44150871 |
T |
|
| Q |
318 |
tggaaagctcactctaaagtttgtggttctagagagtataaatgtgattgtggaacc |
374 |
Q |
| |
|
||||| |||||| ||| ||||||| |||| || || |||||||||||||||||| |
|
|
| T |
44150870 |
tggaaggctcaccagaaaacttgtggtactagggaatacaaatgtgattgtggaacc |
44150814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 54 - 370
Target Start/End: Original strand, 40749182 - 40749498
Alignment:
| Q |
54 |
gaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaactgagacaaagatcaagtaaagaaa |
153 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||||| || ||||||||||| || || ||||||||||| || | |||||||| | |||||| |
|
|
| T |
40749182 |
gaaatatgcaacaaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaagatccaacaaagaac |
40749281 |
T |
|
| Q |
154 |
ttaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtag |
253 |
Q |
| |
|
||||||| ||| || | || || || ||||||||| || || || | |||| || || ||||| | || || ||||| || || ||| |||| |
|
|
| T |
40749282 |
caaggaaaaaggtatacatctgcccggagaatacttgtgtccaccacgacgcggctagggccttgggtgacctcaccggaataaagaaacattttagtag |
40749381 |
T |
|
| Q |
254 |
aaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagag |
353 |
Q |
| |
|
||||||||| ||||| || ||||| ||||| || ||||| ||||||||||| || ||||||||||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
40749382 |
aaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactagagaa |
40749481 |
T |
|
| Q |
354 |
tataaatgtgattgtgg |
370 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
40749482 |
tataagtgtgattgtgg |
40749498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 39683107 - 39683245
Alignment:
| Q |
1 |
aggtgattgctctgtcaccaacaacgttgttggctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactaca |
100 |
Q |
| |
|
|||||||||||||||||| ||||| |||| | ||||| ||| |||||||||||||||||||||||||||| |||||| | | | |||||| |||||| | |
|
|
| T |
39683107 |
aggtgattgctctgtcactaacaatgttgatagctacgaactgatttgtgtgtgaaatatgtaacaaaggatttcaagggggtaagaatcatcaacttta |
39683206 |
T |
|
| Q |
101 |
tagaagaggacataatctaccatggaaactgagacaaag |
139 |
Q |
| |
|
|||||| || ||| |||||||||| ||| |||||||||| |
|
|
| T |
39683207 |
tagaaggggtcatgatctaccatgaaaattgagacaaag |
39683245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 277
Target Start/End: Original strand, 12105879 - 12106126
Alignment:
| Q |
31 |
tggctacaaacagatttgtgtgtgaaatatgtaacaaagggttt-caaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaac |
129 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||| ||||| ||| ||||| |||| ||||||||||| ||| || | ||| |||| ||||| ||||| | |
|
|
| T |
12105879 |
tggcaacaaacagattcgtgtgtgaaatctgtttaaaaggattttcaaaggaatcaaaatcttcaacttcatcgacgtggatataacctaccttggaagc |
12105978 |
T |
|
| Q |
130 |
tgagacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaac |
229 |
Q |
| |
|
||| ||||||| ||||||||||||| ||||| || || ||||| ||||| || || |||||||| || ||||||| || ||| | || |||||||| |
|
|
| T |
12105979 |
tgaaacaaagaacaagtaaagaaataaggaagagagtgtatgtgtgtccagagaagacccgtgttcataatcatccttcaagggctatgggagatttaac |
12106078 |
T |
|
| Q |
230 |
tgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaa |
277 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
12106079 |
agggataaaaaagcacttttataggaaacacagtgagaataagtggaa |
12106126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 31 - 277
Target Start/End: Complemental strand, 46988068 - 46987821
Alignment:
| Q |
31 |
tggctacaaacagatttgtgtgtgaaatatgtaacaaagggttt-caaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaac |
129 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||| ||||| ||| ||||| |||| ||||||||||| ||| || | ||| |||| ||||| ||||| | |
|
|
| T |
46988068 |
tggcaacaaacagattcgtgtgtgaaatctgtttaaaaggattttcaaaggaatcaaaatcttcaacttcatcgacgtggatataacctaccttggaagc |
46987969 |
T |
|
| Q |
130 |
tgagacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaac |
229 |
Q |
| |
|
||| ||||||| ||||||||||||| ||||| || || ||||| ||||| || || |||||||| || ||||||| || ||| | || |||||||| |
|
|
| T |
46987968 |
tgaaacaaagaacaagtaaagaaataaggaagagagtgtatgtgtgtccagagaagacccgtgttcataatcatccttcaagggctctgggagatttaac |
46987869 |
T |
|
| Q |
230 |
tgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaa |
277 |
Q |
| |
|
|||||||| |||||||||||||| || || ||||||| |||||||| |
|
|
| T |
46987868 |
agggataaagaagcacttttgtaggaaccacagtgagaataagtggaa |
46987821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 39683468 - 39683523
Alignment:
| Q |
164 |
ggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttagg |
220 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| | |||||||||||||| |
|
|
| T |
39683468 |
ggtttatgtttgtcctgaatcaacttgtgttcatcatgat-catctagagctttagg |
39683523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 52248506 - 52248460
Alignment:
| Q |
237 |
aaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtga |
283 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
52248506 |
aaaaagcacttttgtagaaagcatggtgagaagaaatggaaatgtga |
52248460 |
T |
|
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