View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5634_high_4 (Length: 445)
Name: NF5634_high_4
Description: NF5634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5634_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 37556891 - 37557319
Alignment:
| Q |
1 |
tctatataatataaattagtcaagagaggcttttaattaagtaattttcatatgtattattatcatatgaatggttcaaatttaatatattgttatggat |
100 |
Q |
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| T |
37556891 |
tctatataatataaattagtcaagagaggcttttaattaagtaattttcatatgtattattatcatatgaatggttcaaatttaatatattgttatggat |
37556990 |
T |
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| Q |
101 |
tcttttgactttgtccaggttggtcttcaaaacaaatgggctgaagttgtctctgcactgaaattggaaggcaacaatgcaatgttatctgctcaagtcg |
200 |
Q |
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| T |
37556991 |
tcttttgactttgtccaggttggtcttcaaaacaaatggactgaagttgtctctgcactgaaattggaaggcaacaatgcaatgttatctgctcaagtcg |
37557090 |
T |
|
| Q |
201 |
aaaagatctatgcaacacttctatacaaatttgagaaattgtacttctacaggtttcctccaaccggctgcgcccaaggtatctgagagatcaatttgtg |
300 |
Q |
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| T |
37557091 |
aaaagatctatgcaacacttctatacaaatttgagaaattgtacttctacaggtttcctccaaccggcagctcccaaggtatctgagagatcaatttgtg |
37557190 |
T |
|
| Q |
301 |
gttattttatgttgatatcttgtttcattccagtacttcacttatatgcttgatatgtagatgtttggtagtttatacataatgtgattttaatttacaa |
400 |
Q |
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| T |
37557191 |
gttattttatgttgatatcttgtttcattccagcacttcacttatatgcttgatatgtagatgtttggtagtttatacataatgtgattttaatttacaa |
37557290 |
T |
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| Q |
401 |
ctagtaatagacaaatgccttgtaaaaac |
429 |
Q |
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| T |
37557291 |
ctagtaatagacaaatgccttgtaaaaac |
37557319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 79 - 264
Target Start/End: Original strand, 41552259 - 41552447
Alignment:
| Q |
79 |
aatttaatatattgttatggattcttttgactttgtcc---aggttggtcttcaaaacaaatgggctgaagttgtctctgcactgaaattggaaggcaac |
175 |
Q |
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|||||||||| |||||||||||||| |||| | | ||| ||||||| | |||| |||||| ||||||||| |||||||| ||| ||||||| ||| |
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| T |
41552259 |
aatttaatatgttgttatggattctcttgaatgtttcctacaggttggccaagaaaagaaatggagtgaagttgtttctgcactaaaactggaaggaaac |
41552358 |
T |
|
| Q |
176 |
aatgcaatgttatctgctcaagtcgaaaagatctatgcaacacttctatacaaatttgagaaattgtacttctacaggtttcctccaac |
264 |
Q |
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| T |
41552359 |
aatgcaaccttatgtgctcaagttgaaaatctctatggttatcttctttacgaatttgagaaattgtacttctacaggtctcctgcaac |
41552447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 264
Target Start/End: Original strand, 34255768 - 34255903
Alignment:
| Q |
129 |
aaaacaaatgggctgaagttgtctctgcactgaaattggaaggcaacaatgcaatgttatctgctcaagtcgaaaagatctatgcaacacttctatacaa |
228 |
Q |
| |
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|||| ||||||| ||||||||| |||||||| ||| ||||||| |||||||||| || | || |||| | |||||| ||||| | |||||| ||||| |
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| T |
34255768 |
aaaagaaatggggtgaagttgtttctgcactaaaactggaaggaaacaatgcaaccttgtgtgatcaacttgaaaagctctataaagaacttctgtacaa |
34255867 |
T |
|
| Q |
229 |
atttgagaaattgtacttctacaggtttcctccaac |
264 |
Q |
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| T |
34255868 |
atttgagacattgtacttctacaggtctcctgcaac |
34255903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 41552184 - 41552232
Alignment:
| Q |
5 |
tataatataaattagtcaagagaggcttttaattaagtaattttcatatgtat |
57 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41552184 |
tataatctaaattagtcaagagaggctt----ttaagtaattttcatatgtat |
41552232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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