View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5634_high_7 (Length: 243)
Name: NF5634_high_7
Description: NF5634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5634_high_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 37047141 - 37047365
Alignment:
| Q |
19 |
ccaaaaccacctcatcatcccaaacccccagcagtacacccaccacatgttccaaaaccacatccaccttatgttccaaaaccaccaattgttaaacctc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37047141 |
ccaaaaccacctcatcatcccaaacccccagcagtacacccaccacatgttccaaaaccacatccaccttatgttccaaaaccaccaattgttaaacctc |
37047240 |
T |
|
| Q |
119 |
caatagtacatccaccttacgtaccaaaacccccagttgtgaaaccaccaccatatgtccctaaaccacctgttgtgagaccaccctatgtccctaaacc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37047241 |
caatagtacatccaccttacgtaccaaaacccccagttgtgaaaccaccaccatatgtccctaaaccacctgttgtgagaccaccctatgttcctaaacc |
37047340 |
T |
|
| Q |
219 |
accagttgtgcctgtaacaccacct |
243 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
37047341 |
accagttgtacctgtaacaccacct |
37047365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University