View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5634_low_2 (Length: 449)
Name: NF5634_low_2
Description: NF5634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5634_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 37047844 - 37047652
Alignment:
| Q |
18 |
ataacaagattgatattaagaagtttaagtctaatagtggtgcaaagacatatagcagcatccaaatcaacaagtccttgaagcaatggacaacatgttt |
117 |
Q |
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| T |
37047844 |
ataacaagattgatattaagaagtttaagtctaatagtggtgcaaagacatatagcagcatccaaatcaacaagtccttgaagcaatggacaacatgttt |
37047745 |
T |
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| Q |
118 |
gtttagcacttccacctataccaatatgtatgagtccaccaagcacatcaacacatgcacccaacttcaaagcatcaatggaacatgtttgtt |
210 |
Q |
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| T |
37047744 |
gtttagcacttccacctataccaatatgtatgagtccaccaagcacatcaacacatgcacccaacttcaaagcatcaatggaacatgtttgtt |
37047652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 332 - 438
Target Start/End: Complemental strand, 37047530 - 37047424
Alignment:
| Q |
332 |
cacataaggtggtgttacaggcacaactggaggtagaggaacatgtggtggaaaaacaattggtggtttcacaattggaggtgttggtacataaggtggt |
431 |
Q |
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| T |
37047530 |
cacataaggtggtgttacaggcacaactggaggtagaggaacatgtggtggaaaaacaattggtggtttcacaattggaggtgttggtacataaggtggt |
37047431 |
T |
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| Q |
432 |
gatgatg |
438 |
Q |
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| T |
37047430 |
ggtgatg |
37047424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 37047442 - 37047378
Alignment:
| Q |
333 |
acataaggtggtgttacaggcacaactggaggtagaggaacatgtggtggaaaaacaattggtgg |
397 |
Q |
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| T |
37047442 |
acataaggtggtggtgatggtacaactggaggtagaggaacatgtggtgggaaaacaattggtgg |
37047378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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