View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5634_low_5 (Length: 252)
Name: NF5634_low_5
Description: NF5634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5634_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 4999351 - 4999132
Alignment:
| Q |
19 |
aacaatagcaggaacacaatcatggtgtaaataagccaaccctttagcagcacctaaagcaattccaaatctcttagaccaatccaactccacaaacttc |
118 |
Q |
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| T |
4999351 |
aacaatagcaggaacacaatcatggtgtaaataagccaaccctttagcagcacctaaagcaattccaaatctcttagaccaatccaactccacaaacttc |
4999252 |
T |
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| Q |
119 |
tcctcatgcaaaacatcacctaaactcccattttccataaactcatacaccaatattctgaaatcatcacaactacaacaaaacaacagtttcactatat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4999251 |
ccctcatgcaaaacatcacctaaactcccattttccataaactcatacaccaatattctgaaatcatcacaactacaacaaaacaacagtttcactatat |
4999152 |
T |
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| Q |
219 |
tagcatgtctaattctaccc |
238 |
Q |
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|||||||||||||||||||| |
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| T |
4999151 |
tagcatgtctaattctaccc |
4999132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 21468558 - 21468521
Alignment:
| Q |
19 |
aacaatagcaggaacacaatcatggtgtaaataagcca |
56 |
Q |
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|||||||| |||| |||||||||||||||||||||||| |
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| T |
21468558 |
aacaataggaggagcacaatcatggtgtaaataagcca |
21468521 |
T |
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