View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5634_low_6 (Length: 250)
Name: NF5634_low_6
Description: NF5634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5634_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 17112887 - 17112807
Alignment:
| Q |
162 |
ctcatgcacacataatactgtattatcaagtgaatatatgagagaaagccacatttttcacccacaatagaatagaataat |
242 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17112887 |
ctcatgcacacataatactatattatcaagtgaatatatgagagaaagccacatttttcacccacaatagaatagaataat |
17112807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 17112973 - 17112938
Alignment:
| Q |
76 |
ataaagataaatttttcaatttacaaccatcacgat |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17112973 |
ataaagataaatttttcaatttacagccatcacgat |
17112938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 20990406 - 20990478
Alignment:
| Q |
162 |
ctcatgcacacataa-tactgtattatcaagtgaatatatgagagaaagccacatttttcacccacaatagaa |
233 |
Q |
| |
|
||||||||||||||| |||| |||||||| | ||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
20990406 |
ctcatgcacacataaatactatattatcatattaatatataaaagaaagccacaattttcacccacaatagaa |
20990478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University