View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5635_low_1 (Length: 591)

Name: NF5635_low_1
Description: NF5635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5635_low_1
NF5635_low_1
[»] chr5 (2 HSPs)
chr5 (396-583)||(29950848-29951035)
chr5 (180-238)||(29950593-29950651)
[»] chr2 (10 HSPs)
chr2 (396-583)||(22299314-22299501)
chr2 (396-583)||(24807158-24807345)
chr2 (404-557)||(23732546-23732698)
chr2 (180-254)||(24807484-24807558)
chr2 (19-90)||(24807647-24807718)
chr2 (180-254)||(22299101-22299175)
chr2 (23-91)||(44794083-44794151)
chr2 (180-238)||(15409680-15409738)
chr2 (518-558)||(44793706-44793746)
chr2 (191-238)||(44793936-44793983)
[»] chr4 (4 HSPs)
chr4 (396-583)||(15018513-15018700)
chr4 (404-582)||(19457233-19457411)
chr4 (396-527)||(19458938-19459068)
chr4 (180-238)||(15018897-15018955)
[»] chr7 (3 HSPs)
chr7 (396-583)||(40999092-40999279)
chr7 (19-91)||(40999612-40999684)
chr7 (180-245)||(40999458-40999523)
[»] chr1 (4 HSPs)
chr1 (404-583)||(20189670-20189849)
chr1 (396-557)||(22063128-22063289)
chr1 (180-238)||(22063492-22063550)
chr1 (180-241)||(20190040-20190101)
[»] scaffold1778 (1 HSPs)
scaffold1778 (396-503)||(1263-1370)
[»] scaffold0139 (2 HSPs)
scaffold0139 (19-91)||(5084-5156)
scaffold0139 (180-254)||(5245-5319)
[»] chr3 (3 HSPs)
chr3 (19-91)||(16347738-16347810)
chr3 (180-254)||(16347899-16347973)
chr3 (396-445)||(16348112-16348161)
[»] scaffold0146 (2 HSPs)
scaffold0146 (180-254)||(8410-8484)
scaffold0146 (19-91)||(8250-8321)
[»] chr6 (2 HSPs)
chr6 (396-463)||(20417029-20417096)
chr6 (396-463)||(20416048-20416115)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 396 - 583
Target Start/End: Original strand, 29950848 - 29951035
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttcttt 495  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  29950848 tttggcctactattacattagtaccttcttctaagttggtttgtgtttttaaatgttgggattcttcttctaatattattcaattgcctaacatttcttt 29950947  T
Q  496 atgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatgaaatatggaacgatgatgatgtccat 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  29950948 atgtcatgaaggaaacaaagagaatgaagaaactttttctcaacaagtggaagaaaattatgagatttggaacgatgatcatgtccat 29951035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 29950593 - 29950651
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29950593 tgatggcaataattgatagaggaatggctgatatctctaaaatactagaggaaaatctc 29950651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 396 - 583
Target Start/End: Original strand, 22299314 - 22299501
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttcttt 495  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  22299314 tttggcctactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttctaatattattcaattgcctaacatttcttt 22299413  T
Q  496 atgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatgaaatatggaacgatgatgatgtccat 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||| ||||||||    
T  22299414 atgtcatgaaggaaacaaagagaatgaagaaactttttctcaacaggtggaaggaaattatgagatttggaacgatgatcatgtccat 22299501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 396 - 583
Target Start/End: Complemental strand, 24807345 - 24807158
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttcttt 495  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  24807345 tttggcctactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttctaatattattcaattgcctaacatttcttt 24807246  T
Q  496 atgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatgaaatatggaacgatgatgatgtccat 583  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||| ||||||| ||||||||| || |||||||||||| ||||||||    
T  24807245 atgtcatgaaggaaacaaagagaacgaagaaactttttcccaacaggtggaaggaaattatgagatttggaacgatgatcatgtccat 24807158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 404 - 557
Target Start/End: Complemental strand, 23732698 - 23732546
Alignment:
Q  404 actattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatg 503  Q
    |||||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  23732698 actattacattagtaccttcttctaagttg-ttagtgttttcaagtgttgggattcttcttctaatattattcaattgcctaacatttctttatgtcatg 23732600  T
Q  504 aaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatg 557  Q
    ||||||||||| ||||||||||||    ||| ||||||||||||| ||||||||    
T  23732599 aaggaaacaaagagaatgaagaaaaaaattcccaacaagtggaaggaaattatg 23732546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 24807558 - 24807484
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctccttgaaaaagagagtc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24807558 tgatggcaataattgatagaggaatggctgatatctctaaaatactagaggaaaatctccttgaaaaagagagtc 24807484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 24807718 - 24807647
Alignment:
Q  19 agatccaccgattgaaacttgggaagaaatgaaaacaatgatgaggaggcgttatgcaccttcttatcatct 90  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  24807718 agatccaccgattgaaacttgggaagaaataaaaacaatgatgaggagacgttatgcaccttcttatcatct 24807647  T

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Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 22299101 - 22299175
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctccttgaaaaagagagtc 254  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  22299101 tgatggcaataattgatagaggaatgactgatatctctaaaatactagaagaaaatctccttgaaaaagagagtc 22299175  T

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Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 44794151 - 44794083
Alignment:
Q  23 ccaccgattgaaacttgggaagaaatgaaaacaatgatgaggaggcgttatgcaccttcttatcatctt 91  Q
    ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  44794151 ccacccattgaaacttgggaggaaatgaaaagaatgatgaggaggcgttatgcaccttcttatcatctt 44794083  T

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Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 15409680 - 15409738
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15409680 tgatggcaataattgatagaggaatggctgatatctctaaaatactagaggaaaatctc 15409738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 518 - 558
Target Start/End: Complemental strand, 44793746 - 44793706
Alignment:
Q  518 aatgaagaaactttttctcaacaagtggaagaaaattatga 558  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  44793746 aatgaagaaattttttctcaacaagtggaagaaaattatga 44793706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 44793983 - 44793936
Alignment:
Q  191 attgatagaggaatggctgatatctctaaaatactaaaggaaaatctc 238  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  44793983 attgatagaggaatggctgatattgctaaaatactagaggaaaatctc 44793936  T

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Target: chr4 (Bit Score: 140; Significance: 5e-73; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 396 - 583
Target Start/End: Complemental strand, 15018700 - 15018513
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttcttt 495  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  15018700 tttggcctactattacactagtaccttcttctaagttggtttgtgtttttaaatgttgggattcttcttctaatattattcaattgcctaacatttcttt 15018601  T
Q  496 atgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatgaaatatggaacgatgatgatgtccat 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  || |||||||||||| ||||||||    
T  15018600 atgtcatgaaggaaacaaagagaatgaagaaactttttctcaacaggtggaagaaaattatgtgatttggaacgatgatcatgtccat 15018513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 404 - 582
Target Start/End: Original strand, 19457233 - 19457411
Alignment:
Q  404 actattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatg 503  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |    
T  19457233 actattaaattagtaccttcttataagttggtttgtgttttcaaatgttgggattcttcttctaatattattcaattgcctaacatttctttatgtcacg 19457332  T
Q  504 aaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatgaaatatggaacgatgatgatgtcca 582  Q
    ||||||||||| ||||||||||||   |||||||||||||||||||||||||||   | ||||| |||||| |||||||    
T  19457333 aaggaaacaaagagaatgaagaaaaaatttctcaacaagtggaagaaaattatgtgttttggaaagatgataatgtcca 19457411  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 396 - 527
Target Start/End: Original strand, 19458938 - 19459068
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttcttt 495  Q
    ||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||   |||||||||||||| |  | ||||||||    
T  19458938 tttggcctactattgcattagtacattcttctaagttggtttgtgttttcaaatgttgggatttttctttttatattattcaattgcc--aaatttcttt 19459035  T
Q  496 atgtcatgaaggaaac-aaatagaatgaagaaa 527  Q
    |||| ||||||||||| ||| ||||||||||||    
T  19459036 atgtaatgaaggaaacaaaagagaatgaagaaa 19459068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 15018955 - 15018897
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15018955 tgatggcaataattgatagaggaatggctgatatctctaaaatactagaggaaaatctc 15018897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 7e-66; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 396 - 583
Target Start/End: Complemental strand, 40999279 - 40999092
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttcttt 495  Q
    ||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||||||||||||    
T  40999279 tttggcctactatgacattagtagcttcttctaaattggtttgtgttttcaaattttgggattcttcttctaatattattcaattgcttaacatttcttt 40999180  T
Q  496 atgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatgaaatatggaacgatgatgatgtccat 583  Q
    |||| |||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||| | |||||||||| ||||||||    
T  40999179 atgttatgaaggaaacaaagagaacgaagaaactttttctcaacaggtggaaggaaattatgaaatttagaacgatgatcatgtccat 40999092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 40999684 - 40999612
Alignment:
Q  19 agatccaccgattgaaacttgggaagaaatgaaaacaatgatgaggaggcgttatgcaccttcttatcatctt 91  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40999684 agatccaccgattgaaacttgggaagaaatgaaaacaataatgaggaggcgttatgcaccttcttatcatctt 40999612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 40999523 - 40999458
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctccttgaaa 245  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  40999523 tgatggcaataattgatagaggaatggctgatatctctaaaatattagaggaaaatctccttgaaa 40999458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 7e-66; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 404 - 583
Target Start/End: Complemental strand, 20189849 - 20189670
Alignment:
Q  404 actattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttctttatgtcatg 503  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| ||    
T  20189849 actattacattagtacattcttctaagttggtttgtgttttcaaatgttgggattgttcttctaatattattcaattgcctaacatttctttatgtcgtg 20189750  T
Q  504 aaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatgaaatatggaacgatgatgatgtccat 583  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||| ||||||||| || |||||||||||| ||||||||    
T  20189749 aaggaaacaaagagaatgaataaactttttctcaacaggtggaaggaaattatgagatttggaacgatgatcatgtccat 20189670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 396 - 557
Target Start/End: Complemental strand, 22063289 - 22063128
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttcttt 495  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  22063289 tttggcctactattacattagtaccttcttctaagttggtttgtgttttcagatgttgggattcttcttctaatattattcaattgcctaacatttcttt 22063190  T
Q  496 atgtcatgaaggaaacaaatagaatgaagaaactttttctcaacaagtggaagaaaattatg 557  Q
    ||||||||||||||||||| ||||||||||||   |||| |||||||| |||| ||||||||    
T  22063189 atgtcatgaaggaaacaaagagaatgaagaaaaaatttcccaacaagttgaaggaaattatg 22063128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 22063550 - 22063492
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctc 238  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  22063550 tgatggcaataattgatagaggaattgctgatatctctaaaatactagaggaaaatctc 22063492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 20190101 - 20190040
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctcctt 241  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  20190101 tgatggcaatagttgatagaggaatgactgatatctctaaaatactataggaaagtctcctt 20190040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1778 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: scaffold1778
Description:

Target: scaffold1778; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 396 - 503
Target Start/End: Original strand, 1263 - 1370
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttcaaatattattcaattgtctaacatttcttt 495  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  1263 tttggcctactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttcttctaatattattcaattgcctaacatttcttt 1362  T
Q  496 atgtcatg 503  Q
    ||||||||    
T  1363 atgtcatg 1370  T

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Target: scaffold0139 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 5084 - 5156
Alignment:
Q  19 agatccaccgattgaaacttgggaagaaatgaaaacaatgatgaggaggcgttatgcaccttcttatcatctt 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5084 agatccaccgattgaaacttgggaagaaatgaaaacaatgatgaggaggcgttatgcaccttcttatcatctt 5156  T

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Target: scaffold0139; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 5245 - 5319
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctccttgaaaaagagagtc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  5245 tgatggcaataattgatagaggaatggctgatatctctaaaatactagagggaaatctccttgaaaaagagagtc 5319  T

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Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 16347738 - 16347810
Alignment:
Q  19 agatccaccgattgaaacttgggaagaaatgaaaacaatgatgaggaggcgttatgcaccttcttatcatctt 91  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16347738 agatccaccaattgaaacttgggaagaaatgaaaacaatgatgaggaggcgttatgcaccttcttatcatctt 16347810  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 16347899 - 16347973
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctccttgaaaaagagagtc 254  Q
    |||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  16347899 tgatggcaataattgatagaggcatggctgatatctctaaaatattagaggaaaatctccttgaaaaagagagtc 16347973  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 396 - 445
Target Start/End: Original strand, 16348112 - 16348161
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttc 445  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16348112 tttggcctactattacattagtaccttcttctaaattggtttgtgttttc 16348161  T

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Target: scaffold0146 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 8410 - 8484
Alignment:
Q  180 tgatggcaataattgatagaggaatggctgatatctctaaaatactaaaggaaaatctccttgaaaaagagagtc 254  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8410 tgatggcaataattgataaaggaatggctgatatctctaaaatactagaggaaaatctccttgaaaaagagagtc 8484  T

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Target: scaffold0146; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 8250 - 8321
Alignment:
Q  19 agatccaccgattgaaacttgggaagaaatgaaaacaatgatgaggaggcgttatgcaccttcttatcatctt 91  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  8250 agatccacc-attgaaacttgggaggaaatgaaaagaatgatgaggaggcgttatgcaccttcttatcatctt 8321  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 463
Target Start/End: Original strand, 20417029 - 20417096
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttct 463  Q
    ||||||| |||||||||||||||||||| || || ||||| |||||  | ||||||||||||||||||    
T  20417029 tttggcctactattacattagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct 20417096  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 20416115 - 20416048
Alignment:
Q  396 tttggccaactattacattagtaccttcttctaaattggtttgtgttttcaaatgttgggattcttct 463  Q
    ||||||| |||||||||||| ||||||| || || ||||| |||||  | ||||||||||||||||||    
T  20416115 tttggcctactattacattaataccttcatcaaagttggtatgtgtagttaaatgttgggattcttct 20416048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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