View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5635_low_2 (Length: 413)
Name: NF5635_low_2
Description: NF5635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5635_low_2 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 177 - 394
Target Start/End: Original strand, 13212184 - 13212401
Alignment:
| Q |
177 |
catgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattga |
276 |
Q |
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| T |
13212184 |
catgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattga |
13212283 |
T |
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| Q |
277 |
gaagattttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccat |
376 |
Q |
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| T |
13212284 |
gaagattttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccat |
13212383 |
T |
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| Q |
377 |
ggttcccggtgaccctaa |
394 |
Q |
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| T |
13212384 |
ggttcccggtgaccctaa |
13212401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 13212016 - 13212103
Alignment:
| Q |
10 |
acatcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaatttaaactaagttataaggagaatgaacaagtgatagat |
97 |
Q |
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| T |
13212016 |
acatcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaatttaaactaagttataaggagaatgaacaagtgatagat |
13212103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 13555 - 13478
Alignment:
| Q |
217 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
294 |
Q |
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| T |
13555 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
13478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 29845934 - 29846011
Alignment:
| Q |
217 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
294 |
Q |
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| T |
29845934 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
29846011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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