View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5635_low_3 (Length: 404)
Name: NF5635_low_3
Description: NF5635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5635_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 36798836 - 36799218
Alignment:
| Q |
13 |
aatatgacataatttaaacatgcatatatgtattttatgcatgtactttagttaaggcctttgatgctgaaatgaacatgatattcaattgcagtcatgc |
112 |
Q |
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| T |
36798836 |
aatatgacataatttaaacatgcatatatgtattttatgcatgtactttagttaaggcctttgatgctgaaatgaacatgatattcaattgcagtcatgc |
36798935 |
T |
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| Q |
113 |
ttacatgtcaatcgctctcacaaagtcatgtccatcacattcacattaaaattaataacaaataacatgctgca----nnnnnnnnnnnaacggaaataa |
208 |
Q |
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| T |
36798936 |
ttacatgtcaatcgctctcacaaagtcatgtccatcacattcacattaaaattaataacaaataacatgctgcatttttttttttttttaacggaaataa |
36799035 |
T |
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| Q |
209 |
catgcatgtannnnnnnaaataaaaagtttggacaaatttaaaattttctaaacagttcatcatgagatgtaatttattaatcaattgagttcaatcctt |
308 |
Q |
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| T |
36799036 |
catgcatgtatttttttaaataaaaagtttggacaaatttaaaattttctaaacagttcatcatgagatgtaatttattaatcaattgagttcaatcctt |
36799135 |
T |
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| Q |
309 |
tgatttgaaatgcatatttgtgtt----nnnnnnnnntcatttcaagaaattatagatcgaaagttagaaattacccaatgct |
387 |
Q |
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| T |
36799136 |
tgatttgaaatgcatatttgtgttaaaaaaataaaaatcatttcaagaaattatagatcgaaagttagaaattacccaatgct |
36799218 |
T |
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