View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5635_low_4 (Length: 387)
Name: NF5635_low_4
Description: NF5635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5635_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 156572 - 156353
Alignment:
| Q |
23 |
cacagatggatcctgtagagatggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaa |
122 |
Q |
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| T |
156572 |
cacagatggatcctgtagagatggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaa |
156473 |
T |
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| Q |
123 |
gtatattggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcat |
222 |
Q |
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| T |
156472 |
gtatattggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggcacatgtatgccagaaggttgcaatttcgatttattgaggtgcat |
156373 |
T |
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| Q |
223 |
gttgactccttagttgttgt |
242 |
Q |
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| T |
156372 |
gttgactccttagttgttgt |
156353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 156217 - 156131
Alignment:
| Q |
256 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtcttttattg |
342 |
Q |
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| T |
156217 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcatagcaatattagtcttctattg |
156131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 31976695 - 31976581
Alignment:
| Q |
128 |
ttggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttga |
227 |
Q |
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| T |
31976695 |
ttggaataggagatgtttatctggcagaattatgtggagtgttggaagggctcatgtatgtcagaaggttgtaatttcgatttattgagttacatgttga |
31976596 |
T |
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| Q |
228 |
ctccttagttgttgt |
242 |
Q |
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| T |
31976595 |
cttcttacttgttgt |
31976581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 37054140 - 37054066
Alignment:
| Q |
169 |
ttggaagggctcatgta-tgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgt |
242 |
Q |
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| T |
37054140 |
ttggaaggggtcatgtaatgttagaaggttgcaattttgatttattgagttgcatgttgactccttagttattgt |
37054066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 31976445 - 31976373
Alignment:
| Q |
264 |
tttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtctt |
336 |
Q |
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| T |
31976445 |
tttagctaattataattgttcgatggagtcagggatatgtttttttgatgtatgtcgtagtaatattagtctt |
31976373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 2909370 - 2909283
Alignment:
| Q |
147 |
tttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactcctta |
234 |
Q |
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| T |
2909370 |
tttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactcctta |
2909283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 2909135 - 2909069
Alignment:
| Q |
268 |
gctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtct |
335 |
Q |
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| T |
2909135 |
gctaactatggttgttcgatggatttgggggtctg-ttttttgatgtctatcctagcaatattagtct |
2909069 |
T |
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