View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636-Insertion-2 (Length: 710)
Name: NF5636-Insertion-2
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 6 - 633
Target Start/End: Original strand, 52763960 - 52764586
Alignment:
| Q |
6 |
caatatcagcaaaccaacttgcaaaacctaactcggttcatcctatttccagcctcaattaaattgctgtttgaagtttctaatatcacttccccgcaat |
105 |
Q |
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| T |
52763960 |
caatatcagcaaaccaacttgcaaaacctaactcggttcatcctatttccagcctcaattaaattgctgtttgaagtttctaatatcacttccccgcaat |
52764059 |
T |
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| Q |
106 |
ttaatttactgcatttctgtgtcagtctacatgcacaagaacgtttggctgaatttgacttgttggttctgtttggattcttcagaaactgacccaccaa |
205 |
Q |
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| T |
52764060 |
ttaatttactgcatttctgtgtcagtctacatgcacaagaacgtttggctgaatttgacttgttggttctgtttggattcttcagaaactgacccaccaa |
52764159 |
T |
|
| Q |
206 |
gtgcacaacaatccatcatccgtatataactaaaattaaaattgtacccttatgataattgattagtcctgttctgcattgtgtttcattgtcatatatt |
305 |
Q |
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| T |
52764160 |
gtgcacaacaatccatcatccgtatataactaaaattaaaattgtacccttatgataattgattagtcctgttctgcattgtgtttcattgtcatatatt |
52764259 |
T |
|
| Q |
306 |
tacccagcattagcagtatgacaatggaaaatacaattttgaatctctaatgatccacattcatcactagtcactttcacaaaaattgtttttatctcaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52764260 |
tacccagcattagcagtatgacaatggaaaatacaattttgaatctctaatgatccacattcatcactagtcactttcacaaaaattg-ttttatctcaa |
52764358 |
T |
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| Q |
406 |
aaagacaacaaataagacacttctgattttaagccttcaagattgaaattgatagagtttatccggatctacggttccacaagcattgatttgattgaaa |
505 |
Q |
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| T |
52764359 |
aaagacaacaaataagacacttctgattttaagccttcaagatgcaaattgatagagtttatccggatctacggttccacaagcattgatttgattgaaa |
52764458 |
T |
|
| Q |
506 |
ctgaatagtgtgaaccataattcaaaacttcggacnnnnnnngacatctcaaaagtactcaatatggggcctattttgaggtaccagttaaacatgttgg |
605 |
Q |
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| T |
52764459 |
ctgaatagtgtgaaacataattcaaaacttcggacaaaaaaagacatctcaaaagtactcaatatggggcctattttgaggtaccagttaaacatgttgg |
52764558 |
T |
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| Q |
606 |
aataatggacttgttagtacccagaaga |
633 |
Q |
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| T |
52764559 |
aataatggacttgttagtacccagaaga |
52764586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 346 - 593
Target Start/End: Original strand, 52770273 - 52770536
Alignment:
| Q |
346 |
gaatctctaatgatccacattcatcactagtcactttcacaaaaattgtttttatctcaaaaagacaacaaataagacacttctgattttaagccttcaa |
445 |
Q |
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| T |
52770273 |
gaatctctaatgatccacatttatcaccaaccgctttcacaagaattgtttt-atcccaaaaagacaaaaaataagacactattgattttaagccttcaa |
52770371 |
T |
|
| Q |
446 |
--------------gattgaaattgatagagtttatccggatctacggttccacaagcattgatttgattgaaactgaatagtgtgaaccataattcaaa |
531 |
Q |
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||| |||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52770372 |
cttcaaaatattgagatacaaatcgataaagattatccggatctacagttccacaagcattgatttgattgaaactgaatagtgtgaaacataattcaaa |
52770471 |
T |
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| Q |
532 |
acttcggacnnnnnnnga---catctcaaaagtactcaatatggggcctattttgaggtaccagt |
593 |
Q |
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||||| ||| | ||||||||||||||||| ||||||||||||||| | |||||||| |
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| T |
52770472 |
acttcagacaaaaaaaaaatccatctcaaaagtactcagtatggggcctatttttaagtaccagt |
52770536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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