View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636-Insertion-3 (Length: 427)
Name: NF5636-Insertion-3
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 43016111 - 43016318
Alignment:
| Q |
7 |
agctagctaaccaacgttggtttacccacctagctaagaaaagaaaatgtaacattataaatagataaatatagttttgatgatgattgatacaaccatt |
106 |
Q |
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| T |
43016111 |
agctagctaaccaacgttggtttacccacctagctaagaaaagaaaatgtaacattataaataaataaatatagttttgatgatgattgatacaaccatt |
43016210 |
T |
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| Q |
107 |
atatatattgtaggttggaataggagaaggttctacaacaagagaaatgcaagcatcaggaggctcatgtgatcaggaagtgcatgaaagacagcatcat |
206 |
Q |
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| T |
43016211 |
atatatattgtaggttggaataggagaaggttctacaacaagagaaatgcaagcatcaggaggctcatgtgatcaggaagtgcatgaaagacagcatcat |
43016310 |
T |
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| Q |
207 |
gtattagc |
214 |
Q |
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|||||||| |
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| T |
43016311 |
gtattagc |
43016318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 43016398 - 43016433
Alignment:
| Q |
294 |
attagtgcaaacgcagctttccatataagtaggcct |
329 |
Q |
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| T |
43016398 |
attagtgcaaacgcagctttccatataagtaggcct |
43016433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 43016495 - 43016531
Alignment:
| Q |
391 |
ttgatgacaattcttaccatgttccaacaatcatgct |
427 |
Q |
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| T |
43016495 |
ttgatgacaattcttaccatgtttcaacaatcatgct |
43016531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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