View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636-Insertion-4 (Length: 395)
Name: NF5636-Insertion-4
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 393
Target Start/End: Original strand, 21493214 - 21493598
Alignment:
| Q |
9 |
ccactaacaacaatgctccaatttctactattgctcatgctgttgatttgaaagctgttctcccagaaaatgttaaggttggtttatctgcatcaattac |
108 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21493214 |
ccactaacaacaatggtccaatttctactattgctcatgctgttgatttgaaagctgttctcccagaaaatgttaaggttggtttatctgcatcaattac |
21493313 |
T |
|
| Q |
109 |
atctaacggccgccaaacgcaacacattcattcatggtctttcacttctaccttggcatgattggtcttctacgtatacgttatctatgcatgcatggaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
21493314 |
atctaacggccgccaaacgcaacacattcattcatggtctttcacttctaccttggcatgattggtcttctatgta--cgttatgtatgcatgcatggaa |
21493411 |
T |
|
| Q |
209 |
attgtgata--ataactattatggccaaacaaaagtccatactagattgtgaatttgtgatgataactagtatggctaaagaaaagaccatacttgaaca |
306 |
Q |
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||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21493412 |
attgtgatataataactagtatggctaaacaaaagtccatactagattgtgaatttgtgatgataactagtatggctaaagaaaagaccatacttgaaca |
21493511 |
T |
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| Q |
307 |
actacgtgtatgtttcagtttatctataaataaagtccatgcttaacctaattataatgttacctaaataactaagtcatgaatctc |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21493512 |
actacgtgtatgtttcagtttatctataaataaagtccatgcttaacctaattataatgttacctaaataactaagtcatgaatctc |
21493598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 21483061 - 21483309
Alignment:
| Q |
8 |
gccactaacaacaatgctccaatttctactattgctcatgctgttgatttgaaagctgttctcccagaaaatgttaaggttggtttatctgcatcaatta |
107 |
Q |
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|||||| ||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||||| || ||| |
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| T |
21483061 |
gccactgacaacaatggtcaaatttcaactgttgctcatgctgttgatttgaaagctgttctcccacagaacgttagggttggtttatctgcaacagtta |
21483160 |
T |
|
| Q |
108 |
catctaacggccgccaaacgcaacacattcattcatggtctttcacttctaccttggcatgattggtcttctacgtatacgttatctatgcatgcatgga |
207 |
Q |
| |
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||||| |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |
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| T |
21483161 |
catctggcggccgccaattgcaaaacattcattcgtggtctttcacttctaccttggcatgattggacttc------tacgttatgtatgcatgcatgga |
21483254 |
T |
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| Q |
208 |
aattgtgataataactattatg----gccaaacaaaagtccatactagattgtga |
258 |
Q |
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| T |
21483255 |
gattgtgataataactagtatggctagctaaacaaaagaccatactagattgtga |
21483309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 21489406 - 21489662
Alignment:
| Q |
8 |
gccactaacaacaatgctccaatttctactattgctcatgctgttgatttgaaagctgttctcccagaaaatgttaaggttggtttatctgcatcaatta |
107 |
Q |
| |
|
|||||||||| ||||| || |||||||||| ||||| ||| ||||||||||||||||||||||||| || |||| ||||||||| |||| | || ||| |
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| T |
21489406 |
gccactaacagcaatggtcaaatttctactcttgctgatgttgttgatttgaaagctgttctcccaccgaacgttagggttggtttttctggaacagtta |
21489505 |
T |
|
| Q |
108 |
catctaacggccgccaaacgcaacacattcattcatggtctttcacttctaccttggcatgattggtcttctacgtatacgttatct----atgcatgca |
203 |
Q |
| |
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|| || |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| | ||||||||| |
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| T |
21489506 |
cagctgtcggccgccaattgcaacagattcattcatggtctttcacttcaaccttggcatgattggtctcctacg--tacgttatgtatgcatgcatgca |
21489603 |
T |
|
| Q |
204 |
tggaaattgtg----ataataactattatggccaaacaaaagtccatactagattgtga |
258 |
Q |
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|||| |||||| |||||||||| |||||| ||||||||||||||| |||||||||| |
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| T |
21489604 |
tggagattgtgatatataataactagtatggctaaacaaaagtccatattagattgtga |
21489662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 21483432 - 21483509
Alignment:
| Q |
209 |
attgtgataataactattatggccaaacaaaagtccatactagattgtgaatttgtgatgataactagtatggctaaa |
286 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21483432 |
attgtgataataactagtatggctaaacaaaagtccatactagattgtgaatttgtgatgataactagtatgtctaaa |
21483509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 390
Target Start/End: Original strand, 21483520 - 21483640
Alignment:
| Q |
261 |
ttgtgatgataactagtatggctaaagaaaagaccatacttgaacaactacgtgtatgtttcagtttatctataaataaagtccatgcttaacctaatta |
360 |
Q |
| |
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||||||| |||||||||||||||||| ||||||||||||||| || | || |||||||| |||| |||||||||||||||||||||||||| |
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| T |
21483520 |
ttgtgataataactagtatggctaaacaaaagaccatacttg---aatcatgtatatgtttcggtttttctataaataaagtccatgcttaacc------ |
21483610 |
T |
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| Q |
361 |
taatgttacctaaataactaagtcatgaat |
390 |
Q |
| |
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|||||||||||||||||| ||||||||||| |
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| T |
21483611 |
taatgttacctaaataaccaagtcatgaat |
21483640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 261 - 393
Target Start/End: Original strand, 21489775 - 21489897
Alignment:
| Q |
261 |
ttgtgatgataactagtatggctaaagaaaagaccatacttgaacaactacgtgtatgtttcagtttatctataaataaagtccatgcttaacctaatta |
360 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||||||||||||| | || ||||||||| |||||||||||||||| ||||||||||| | |
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| T |
21489775 |
ttgtgataataactggtatggctaaaccaaagaccatacttgaaccat---gtatatgtttcaatttatctataaataaa-tccatgcttaaac------ |
21489864 |
T |
|
| Q |
361 |
taatgttacctaaataactaagtcatgaatctc |
393 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
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| T |
21489865 |
taatgttacctaaatagctaagtcatgaatctc |
21489897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 21483389 - 21483472
Alignment:
| Q |
209 |
attgtgataataactattatggccaaacaaaagtccatactagattgtgaatttgtgatgataactagtatggctaaagaaaagaccatact |
300 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||| |||| ||||||| |||||||||||||||||| ||||| ||||||| |
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| T |
21483389 |
attgtgataataactagtatggctaaacaaaagtccatattaga--------ttgtgataataactagtatggctaaacaaaagtccatact |
21483472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 21483303 - 21483352
Alignment:
| Q |
209 |
attgtgataataactattatggccaaacaaaagtccatactagattgtga |
258 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| |||||||||| |
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| T |
21483303 |
attgtgataataactagtatggctaaacaaaagtccatattagattgtga |
21483352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 21483346 - 21483395
Alignment:
| Q |
209 |
attgtgataataactattatggccaaacaaaagtccatactagattgtga |
258 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| |||||||||| |
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|
| T |
21483346 |
attgtgataataactagtatggctaaacaaaagtccatattagattgtga |
21483395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 21489656 - 21489705
Alignment:
| Q |
209 |
attgtgataataactattatggccaaacaaaagtccatactagattgtga |
258 |
Q |
| |
|
|||||||||||||||| |||| | |||||| || |||||||||||||||| |
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|
| T |
21489656 |
attgtgataataactagtatgcctaaacaatagaccatactagattgtga |
21489705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 21483519 - 21483559
Alignment:
| Q |
209 |
attgtgataataactattatggccaaacaaaagtccatact |
249 |
Q |
| |
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|||||||||||||||| |||||| ||||||||| ||||||| |
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|
| T |
21483519 |
attgtgataataactagtatggctaaacaaaagaccatact |
21483559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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