View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636-Insertion-5 (Length: 200)
Name: NF5636-Insertion-5
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636-Insertion-5 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 27249172 - 27249364
Alignment:
| Q |
8 |
ctgaagtgcaacaaactttagcaccatgcgttccgtacgtaacacacccaggtccacccatctctcccccaccaccatgttgcaatgcggttaagacttt |
107 |
Q |
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| T |
27249172 |
ctgaagtgcaacaaactttagcaccatgcgttccgtacgtaacacacccaggtccacccatctctcccccaccaccatgttgcaatgcggttaagacttt |
27249271 |
T |
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| Q |
108 |
aaatggccaatccaaaactacccaagatcgtcgagatgtttgcggttgcctcaaatccatgatgggcggcatacctggactcaatcttcctgc |
200 |
Q |
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| T |
27249272 |
aaatggccaatccaaaactacccaagatcgtcgagatgtttgcggttgcctcaaatccatgatgggcggcatacctggactcaatcttcctgc |
27249364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 27243212 - 27243392
Alignment:
| Q |
17 |
aacaaactttagcaccatgcgttccgtacgtaacacacccaggtccacccatctctcccccaccaccatgttgcaatgcggttaagactttaaatggcca |
116 |
Q |
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| T |
27243212 |
aacaaactttaacaccatgccttgagtacgtaacacacccaggttcacccc---ctccccctgaaccatgttgcaatgcggttaaggctatacatggcca |
27243308 |
T |
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| Q |
117 |
atccaaaactacccaagatcgtcgagatgtttgcggttgcctcaaatccatgatgggcggcatacctggactcaatcttcctgc |
200 |
Q |
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| T |
27243309 |
aacccatactccccaagatcgtcgagattgttgcagttgcgtcaaatccatgataggcgacatacctggactcaatcttcctgc |
27243392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 27220340 - 27220513
Alignment:
| Q |
18 |
acaaactttagcaccatgcgttccgtacgtaacacacccaggtccacccatctctcccccaccaccatgttgcaatgcggttaagactttaaatggccaa |
117 |
Q |
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| T |
27220340 |
acaaactttaacaccatgccttccgcacgtatcaaacccaggtcca------tctccccctcaaccatgttgcaatagggttaagactttaaatagccaa |
27220433 |
T |
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| Q |
118 |
tccaaaactacccaagatcgtcgagatgtttgcggttgcctcaaatccatgatgggcggcatacctggactcaatcttcc |
197 |
Q |
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| T |
27220434 |
gccaaaactacgcaagatcgtcatcatgtttgcggttgcctcaaatctcttatggccggcatacctggactcaatcttcc |
27220513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 27304559 - 27304649
Alignment:
| Q |
81 |
accatgttgcaatgcggttaagactttaaatggccaatccaaaactacccaagatcgtcgagatgtttgcggttgcctcaaatccatgatg |
171 |
Q |
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| T |
27304559 |
accatgttgcaatgggattaagactttacatggccaatcccaaactcccctagatcgtcgagatgtttgcggttgcctcaaatccatgatg |
27304649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 14889912 - 14889756
Alignment:
| Q |
8 |
ctgaagtgcaacaaactttagcaccatgcgttccgtacgtaacacacccaggtccacccatctctcccccaccaccatgttgcaatgcggttaagacttt |
107 |
Q |
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| T |
14889912 |
ctgaagtgcaacaaactttagcaccatgcggtccatacttgatacaaccaggtccacccc---ctccccctgaaccatgttgcaatggggttaagacttt |
14889816 |
T |
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| Q |
108 |
aaatggccaatccaaaactacccaagatcgtcgagatgtttgcggttgcctcaaatccat |
167 |
Q |
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| T |
14889815 |
aaatgaccaagcccgaactcaacaagatcgtcgagatgtttgcggttgcctcaaatccat |
14889756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 14884258 - 14884105
Alignment:
| Q |
11 |
aagtgcaacaaactttagcaccatgcgttccgtacgtaacacacccaggtccacccatctctcccccaccaccatgttgcaatgcggttaagactttaaa |
110 |
Q |
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| T |
14884258 |
aagtgcaacaaactttagcaccatgcattccgtacctaacaaacccaggtccacc---ccctccccctgacccatgttgcaatgggtataagactttaga |
14884162 |
T |
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| Q |
111 |
tggccaatccaaaactacccaagatcgtcgagatgtttgcggttgcctcaaatccat |
167 |
Q |
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| T |
14884161 |
tggccaaatcaaaactcctgaagatattcaagatgtttgctattgccttaaacccat |
14884105 |
T |
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