View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636_high_10 (Length: 291)
Name: NF5636_high_10
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 7829740 - 7829993
Alignment:
| Q |
17 |
atgtccaaccttgtatgtttaagtgcatcagagtgcaccatgctaagaagctttgtgccaaaaatgtattttccatctctc-aagtactttcatttaact |
115 |
Q |
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| T |
7829740 |
atgtccaaccttgtatgtttaagtgcatcagagtgcaccatactaagaagctttgtgccaaaaatgtattttccatctctcgaagtactttcatttaact |
7829839 |
T |
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| Q |
116 |
tttgcacaagacttgaacacttcccagatgtaatgagaaatatggataagccattgaatattcacttgtctattggtaaacttacagggcttgagtatgt |
215 |
Q |
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| T |
7829840 |
tttgcacaagacttgaacacttcccagatgtaatgagaaatatggataagccattgaatattcacttgtctattggtaaacttacagggcttgagtatgt |
7829939 |
T |
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| Q |
216 |
tgacatgtcaacttgcaaacaactcaaatatctgtcaaaaagctttatatcgtt |
269 |
Q |
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| T |
7829940 |
tgacatgtcaacttgcaaacaactcaaatatctgtcaaaaagctttatatcgtt |
7829993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 7760620 - 7760507
Alignment:
| Q |
68 |
tttgtgccaaaaatgtattttccatctct-caagtactttcatttaacttttgcacaagacttgaacacttcccagatgtaatgagaaatatggataagc |
166 |
Q |
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| T |
7760620 |
tttgtgccaaaaatgtatttgccctcccttcaagagctttcatttaatttctgcaaaaaatttaaacacttcccgcaagtaatgcaaaagatggataagc |
7760521 |
T |
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| Q |
167 |
cattgaatattcac |
180 |
Q |
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| T |
7760520 |
cattaaagattcac |
7760507 |
T |
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