View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636_high_15 (Length: 250)
Name: NF5636_high_15
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 12514703 - 12514508
Alignment:
| Q |
14 |
agtttttgcaatcacaggtcacaccattccacacaaggtcgcatggttaaagtctcacatgtccattatata-tactagcgtcaagaagtgcctttcttt |
112 |
Q |
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| T |
12514703 |
agtttttgcaatcacaggtcacaccattccacacaaggtcgcatggtttaagtctcacatgtccattatataatactagcgtcaagaagtgcctttcttt |
12514604 |
T |
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| Q |
113 |
tcgcttttaccaataaaaataacagaagttgtaaaatttatttcaattatctataaaaaattaaattatttgattggtatgaaagggaaaagcagt |
208 |
Q |
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| T |
12514603 |
tcgcttttaccaataaaaataacagaagttgtaaaatttatttcaattatctataaaaaattaaattatttgattggtatgaaagggaaaagcagt |
12514508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 12486392 - 12486303
Alignment:
| Q |
116 |
cttttaccaataaaaataacagaagttgtaaaatttatttcaattatcta-taaaaaattaaattatttgattggtatgaaagggaaaag |
204 |
Q |
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| T |
12486392 |
cttttaccaataaaaataacagaagttttaaaattttatttgattatttatttaaaaattaaatcatttgattggtaagaaagggaaaag |
12486303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 12486504 - 12486421
Alignment:
| Q |
14 |
agtttttgcaatcacaggtcacaccattccacacaaggtcgcatggttaaagtctcacatgtccattatat-atactagcgtcaa |
97 |
Q |
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| T |
12486504 |
agttttggcaatcacagttcacaccattccacacaa-gttgtatgttttaagtttcacatgtccattacataatactagtgtcaa |
12486421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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