View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5636_high_5 (Length: 401)

Name: NF5636_high_5
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5636_high_5
NF5636_high_5
[»] scaffold0038 (3 HSPs)
scaffold0038 (1-148)||(37650-37799)
scaffold0038 (332-384)||(45124-45176)
scaffold0038 (313-372)||(36764-36824)
[»] chr6 (11 HSPs)
chr6 (1-148)||(28237488-28237637)
chr6 (321-384)||(28295774-28295837)
chr6 (321-384)||(28516236-28516299)
chr6 (332-384)||(28244962-28245014)
chr6 (59-146)||(28187726-28187813)
chr6 (321-384)||(28187481-28187544)
chr6 (7-59)||(28523723-28523775)
chr6 (313-372)||(28236602-28236662)
chr6 (90-148)||(28523611-28523669)
chr6 (313-358)||(28327638-28327686)
chr6 (313-358)||(28505274-28505322)
[»] chr5 (2 HSPs)
chr5 (2-55)||(16993547-16993600)
chr5 (2-61)||(6434630-6434689)
[»] chr8 (1 HSPs)
chr8 (1-59)||(30838126-30838184)
[»] chr1 (1 HSPs)
chr1 (7-58)||(24780742-24780793)
[»] chr7 (1 HSPs)
chr7 (91-156)||(22384018-22384084)
[»] chr3 (2 HSPs)
chr3 (9-59)||(45884609-45884660)
chr3 (90-148)||(27048071-27048129)
[»] chr4 (1 HSPs)
chr4 (91-148)||(27655597-27655655)


Alignment Details
Target: scaffold0038 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37799 - 37650
Alignment:
Q  1 gattaaagattgagaattagaaagaaatgatacatataaactcgggtaaaataatatgag--ttaaaaatactctcaagttatttatgctatatatcatt 98  Q
    ||||||||||||||||||||||||||| || ||| ||||| ||| |||||||||||||||  ||||||| ||||| || |||||||| || |||||||||    
T  37799 gattaaagattgagaattagaaagaaaggaaacacataaattcgagtaaaataatatgagagttaaaaaaactcttaaattatttatactctatatcatt 37700  T
Q  99 attttaattttagttccctaattgtcgatgtaattaattaattttattca 148  Q
    ||| |||||||||||| | |||||| ||||||||||||| ||||||||||    
T  37699 attctaattttagttctccaattgtggatgtaattaattgattttattca 37650  T

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Target: scaffold0038; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 45176 - 45124
Alignment:
Q  332 acatttacacataccttcattgtgccatgaaacccaaatgaaataaagtcact 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45176 acatttacacataccttcattgtgccatgaaacccaaatgaaataaagtcact 45124  T

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Target: scaffold0038; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 36824 - 36764
Alignment:
Q  313 gacgagggaaaaaa-tcattacatttacacataccttcattgtgccatgaaacccaaatga 372  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||| | ||| |||||||    
T  36824 gacgagggaaaaaaatcattacatttacacataccttcactgtgccacgcaactcaaatga 36764  T

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Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 28237637 - 28237488
Alignment:
Q  1 gattaaagattgagaattagaaagaaatgatacatataaactcgggtaaaataatatgag--ttaaaaatactctcaagttatttatgctatatatcatt 98  Q
    ||||||||||||||||||||||||||| || ||| ||||| ||| |||||||||||||||  ||||||| ||||| || |||||||| || |||||||||    
T  28237637 gattaaagattgagaattagaaagaaaggaaacacataaattcgagtaaaataatatgagagttaaaaaaactcttaaattatttatactctatatcatt 28237538  T
Q  99 attttaattttagttccctaattgtcgatgtaattaattaattttattca 148  Q
    ||| |||||||||||| | |||||| ||||||||||||| ||||||||||    
T  28237537 attctaattttagttctccaattgtggatgtaattaattgattttattca 28237488  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 28295774 - 28295837
Alignment:
Q  321 aaaaaatcattacatttacacataccttcattgtgccatgaaacccaaatgaaataaagtcact 384  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28295774 aaaaaatcattacatttacacataccttcattgtgccatgcaacccaaatgaaataaagtcact 28295837  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 28516299 - 28516236
Alignment:
Q  321 aaaaaatcattacatttacacataccttcattgtgccatgaaacccaaatgaaataaagtcact 384  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28516299 aaaaaatcattacatttacacataccttcattgtgccatgcaacccaaatgaaataaagtcact 28516236  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 28245014 - 28244962
Alignment:
Q  332 acatttacacataccttcattgtgccatgaaacccaaatgaaataaagtcact 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245014 acatttacacataccttcattgtgccatgaaacccaaatgaaataaagtcact 28244962  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 28187813 - 28187726
Alignment:
Q  59 agttaaaaatactctcaagttatttatgctatatatcattattttaattttagttccctaattgtcgatgtaattaattaattttatt 146  Q
    ||||||||||||||| || ||||| |  || |||||| ||||| |||||||||||||||||||||  |||||||||||||||||||||    
T  28187813 agttaaaaatactcttaaattattcaaactctatatcgttattctaattttagttccctaattgtgaatgtaattaattaattttatt 28187726  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 28187544 - 28187481
Alignment:
Q  321 aaaaaatcattacatttacacataccttcattgtgccatgaaacccaaatgaaataaagtcact 384  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||||||  ||||||||||    
T  28187544 aaaaaatcattacatttacacataccttcattgtgccacgcaactcaaatgatgtaaagtcact 28187481  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 28523775 - 28523723
Alignment:
Q  7 agattgagaattagaaagaaatgatacatataaactcgggtaaaataatatga 59  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||||||||    
T  28523775 agattgagaattagaaagaaaggatacacataaactcaggtaaaataatatga 28523723  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 28236662 - 28236602
Alignment:
Q  313 gacgagggaaaaaa-tcattacatttacacataccttcattgtgccatgaaacccaaatga 372  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||| | ||| |||||||    
T  28236662 gacgagggaaaaaaatcattacatttacacataccttcactgtgccacgcaactcaaatga 28236602  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 28523669 - 28523611
Alignment:
Q  90 tatatcattattttaattttagttccctaattgtcgatgtaattaattaattttattca 148  Q
    |||||||||||| ||||||||||| || |||||| |||| |||||||| ||||||||||    
T  28523669 tatatcattattctaattttagtttcccaattgtggatgaaattaattgattttattca 28523611  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 28327686 - 28327638
Alignment:
Q  313 gacgaggg-aaaaaatcattacatttacac--ataccttcattgtgcca 358  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||||    
T  28327686 gacgagggtaaaaaatcattacatttacacatataccttcattgtgcca 28327638  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 28505322 - 28505274
Alignment:
Q  313 gacgaggg-aaaaaatcattacatttacac--ataccttcattgtgcca 358  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||||    
T  28505322 gacgagggtaaaaaatcattacatttacacatataccttcattgtgcca 28505274  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 16993547 - 16993600
Alignment:
Q  2 attaaagattgagaattagaaagaaatgatacatataaactcgggtaaaataat 55  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  16993547 attaaagattgagaattagaaagaaatgatacacataaactcgagtaaaataat 16993600  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 6434689 - 6434630
Alignment:
Q  2 attaaagattgagaattagaaagaaatgatacatataaactcgggtaaaataatatgagt 61  Q
    |||| ||||||||||||   ||||||||||||| ||||||||||||||||||||||||||    
T  6434689 attagagattgagaattgataagaaatgatacacataaactcgggtaaaataatatgagt 6434630  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30838126 - 30838184
Alignment:
Q  1 gattaaagattgagaattagaaagaaatgatacatataaactcgggtaaaataatatga 59  Q
    ||||| |||| ||||||||||||||||||||| | ||||| ||||||||||||||||||    
T  30838126 gattagagatcgagaattagaaagaaatgatagacataaattcgggtaaaataatatga 30838184  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 24780793 - 24780742
Alignment:
Q  7 agattgagaattagaaagaaatgatacatataaactcgggtaaaataatatg 58  Q
    ||||||||||||  |||||||||||||| |||||||| ||||||||||||||    
T  24780793 agattgagaattgaaaagaaatgatacacataaactcaggtaaaataatatg 24780742  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 22384018 - 22384084
Alignment:
Q  91 atatcattattttaattttagttccctaattgtcgatgtaattaattaattttattc-atattttag 156  Q
    |||| |||||| |||||||||||||| |||| | ||||||||||||| ||||||||| |||||||||    
T  22384018 atattattattctaattttagttccccaattatggatgtaattaattgattttattcaatattttag 22384084  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 45884609 - 45884660
Alignment:
Q  9 attgagaattagaaa-gaaatgatacatataaactcgggtaaaataatatga 59  Q
    ||||||||||||||| |||| || ||| ||||||||||||||||||||||||    
T  45884609 attgagaattagaaaagaaaggaaacacataaactcgggtaaaataatatga 45884660  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 27048071 - 27048129
Alignment:
Q  90 tatatcattattttaattttagttccctaattgtcgatgtaattaattaattttattca 148  Q
    |||||||||||| |||||||||| | ||||||||  |||||||||||| |||| |||||    
T  27048071 tatatcattattctaattttagtgctctaattgtgaatgtaattaattgatttcattca 27048129  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 27655597 - 27655655
Alignment:
Q  91 atatcattattt-taattttagttccctaattgtcgatgtaattaattaattttattca 148  Q
    |||||||||||| |||||||||| ||| |||| | ||||||||||||| ||||||||||    
T  27655597 atatcattatttctaattttagtgccccaattatggatgtaattaattgattttattca 27655655  T

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