View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636_low_1 (Length: 644)
Name: NF5636_low_1
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 1172928 - 1172504
Alignment:
| Q |
18 |
cttgagggaaacaaaaagagtcagtcgatattgagagttataatcgtcgtttaatttgcttgttattcacaattcttcactttgtttcaagtttctcact |
117 |
Q |
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| T |
1172928 |
cttgagggaaacaaaaagagtcagtcgatattgagagttataatcgtcgttt-----gcttgttattcacaattcttcactttgtttcaagtttctcact |
1172834 |
T |
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| Q |
118 |
ttcaggtatgcatattaaactcttaatattaatttcagcatgtatatatattatcgctatcgaatttattgtttgtttgttcatgcatgtgcctaagtaa |
217 |
Q |
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| T |
1172833 |
ttcaggtatgcatattaaactcttaatattaatttcagcatgtatatatattatcgctatcgaatttattgtttgtttgttcatgcatgtgcctaagtaa |
1172734 |
T |
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| Q |
218 |
gtcagaatgccttatttatgattgatgtttcaacatgttcaattcttaatattaattttaatatcaagttgatttgctaatccactcttgtaataggttg |
317 |
Q |
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| T |
1172733 |
gtc-gaat---ttat---tgtttgtt---------tgttcgattcttaatattaattttaatatcaagttgatttgctaatcca-ttgtgtaataggttg |
1172651 |
T |
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| Q |
318 |
tcattaattggaccagtttttagggttacactttagattctcaattttcgtctcaccctttatataactccctttcctaaaccctaaaccctaccaatga |
417 |
Q |
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| T |
1172650 |
tcattaattggaccagtttttaggggtacactttagactctcaattctcatctcaccctttatataactccctttccaaaaccctaaaccctaccaatga |
1172551 |
T |
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| Q |
418 |
ctaaagttcaaaatctattttgcaggttctgtgtctggacattgttt |
464 |
Q |
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| T |
1172550 |
ctaaagttcaaaatctattttgcaggttctgtgtctggacattgttt |
1172504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 462 - 624
Target Start/End: Complemental strand, 1172479 - 1172317
Alignment:
| Q |
462 |
tttgcaaagaatcccttaggcctagcatgaagataatactttctgtactcttcctattgatgatctcaagtgctcaagctttgaaccaaaacgatgggtt |
561 |
Q |
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| T |
1172479 |
tttgcaaagaatcccttaggcctagcatgaagataatactttctgtactcttcctattgatgatctcaagtgctcaagctttgaaccaaaacgatgggtt |
1172380 |
T |
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| Q |
562 |
catggaaagtcggaatgatcacaaacatgaactatctcttcctataagaaagggaggtggatt |
624 |
Q |
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| T |
1172379 |
cgtggaaagtcggaatgatcacaaacatgaactatctcttactataagaaagggaggtggatt |
1172317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 479 - 618
Target Start/End: Complemental strand, 1165104 - 1164965
Alignment:
| Q |
479 |
aggcctagcatgaagataatactttctgtactcttcctattgatgatctcaagtgctcaagctttgaaccaaaacgatgggttcatggaaagtcggaatg |
578 |
Q |
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| T |
1165104 |
aggcctaccatgaaggtaatactttctgtactgttcatattgatgatctcaagtgctcaagctttgaaccaccatgatgggttcgcggaaagtcggaatg |
1165005 |
T |
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| Q |
579 |
atcacaaacatgaactatctcttcctataagaaagggagg |
618 |
Q |
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| T |
1165004 |
atcacaaacatgaactatcccatactataagaaagggagg |
1164965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 1181907 - 1181795
Alignment:
| Q |
280 |
atcaagttgatttgctaatccactcttgtaataggttgtcattaattggaccagtttttagggttacactttagattctcaattttcgtctcacccttta |
379 |
Q |
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| T |
1181907 |
atcaagttgatttgctaatccattgtagtaataggtcgtcatt----ggacccgtttttagggctccacattagattctcagttctcttctcacctttta |
1181812 |
T |
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| Q |
380 |
tataactccctttccta |
396 |
Q |
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| T |
1181811 |
tatatctccctttccta |
1181795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 1182431 - 1182388
Alignment:
| Q |
169 |
tatcgctatcgaatttattgtttgtttgttcatgcatgtgccta |
212 |
Q |
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| T |
1182431 |
tatcgctatcgaatttattgtttgtttgttcatgcatgtgccta |
1182388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 618
Target Start/End: Complemental strand, 1160387 - 1160311
Alignment:
| Q |
542 |
ttgaaccaaaacgatgggttcatggaaagtcggaatgatcacaaacatgaactatctcttcctataagaaagggagg |
618 |
Q |
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| T |
1160387 |
ttgaaccacaaagatgggtttgtggaaagtcaaaatgcacacaaacatgaactatctgttactataagaaagggagg |
1160311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 1182525 - 1182462
Alignment:
| Q |
84 |
tcacaattcttcactttgtttcaagtttctca-ctttcagg--tatgcatattaaactcttaat |
144 |
Q |
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| T |
1182525 |
tcacaagtcttcactttgtttcaagtttctcacctttcaggtatatacatatttaattcttaat |
1182462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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