View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5636_low_13 (Length: 266)
Name: NF5636_low_13
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 34255465 - 34255678
Alignment:
| Q |
16 |
atcccttgacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtatattgttcggttatcaaaagctcgaatctcctctgagag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34255465 |
atcccttgacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtatattgttcggttatcaaaagctcgaatctcctctgagag |
34255564 |
T |
|
| Q |
116 |
tggtgtccacatttagttttcgacgttgcctcaaacatggtttcctcctgtatgtgggaaaccnnnnnnntatgcagcttccatttggagatcatgttta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
34255565 |
tggtgtccacatttagttttcgacgttgcctcaaacatggtttcctcctgtatgtgggaaaccaaaaaaatatgtagcttccatttggagatcatgttta |
34255664 |
T |
|
| Q |
216 |
tccatccaaatatg |
229 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34255665 |
tccatccaaatatg |
34255678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 41551688 - 41551754
Alignment:
| Q |
23 |
gacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtatattgttcggtta |
89 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41551688 |
gacttgtacctcttttacttggaggtcacaagaagaggaggttatcaccaggtatattgtttggtta |
41551754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 37556731 - 37556797
Alignment:
| Q |
23 |
gacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtatattgttcggttat |
90 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | ||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
37556731 |
gacttgtacctcttttacttggaagtcaccagaagaggaggttttcaccaggtat-ttgtccggttat |
37556797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University