View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636_low_17 (Length: 242)
Name: NF5636_low_17
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636_low_17 |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 33432421 - 33432339
Alignment:
| Q |
160 |
gtatgaagaatgctaacaatgtccacttattcatgatttaaataggtagctaagaagctcatggttatgtatgaagaatgctt |
242 |
Q |
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| T |
33432421 |
gtatgaagaatgctaacaatgtccacttattcatgatttaaataggtagctaagaagctcatggttatgtatgaagaatgctt |
33432339 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 33432561 - 33432526
Alignment:
| Q |
20 |
tttgccaccactcaagaggtatatgtcatttttcca |
55 |
Q |
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| T |
33432561 |
tttgccaccactcaagaggtatatgtcatttttcca |
33432526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 33967280 - 33967321
Alignment:
| Q |
201 |
ataggtagctaagaagctcatggttatgtatgaagaatgctt |
242 |
Q |
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| T |
33967280 |
ataggtagctaagaaactcatggttatgcatgaagaatgctt |
33967321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 51162018 - 51162050
Alignment:
| Q |
210 |
taagaagctcatggttatgtatgaagaatgctt |
242 |
Q |
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| T |
51162018 |
taagaaactcatggttatgtatgaagaatgctt |
51162050 |
T |
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