View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636_low_19 (Length: 239)
Name: NF5636_low_19
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 3598493 - 3598264
Alignment:
| Q |
10 |
catcatcacctgctgtatcatttatagaattttcggcagcatgtgctttatcattcactaaaacatccgaaccacctaaagtgtcatttacggggttttc |
109 |
Q |
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| T |
3598493 |
catcatcacctgctgtatcatttatagaattttcggcagcatgtgctttatcattcactaaaacatccgaaccacctaaagtgtcatttacggggttttc |
3598394 |
T |
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| Q |
110 |
tgcaccaactgcttggtcttttgcaacatttacaggattttctgccccacctgcttgattgcttataggattttctgtagtaggagtagcctggtttaca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3598393 |
tgcaccaactgcttggtcttttgcaacatttacaggattttctgccccacctgcttgattgcttataggattttctgtagtaggagtggcctggtttaca |
3598294 |
T |
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| Q |
210 |
ggattctcggcaacactagctgcattgttt |
239 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3598293 |
ggattctcggcaacactagctgcattgttt |
3598264 |
T |
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