View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636_low_2 (Length: 601)
Name: NF5636_low_2
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 20 - 593
Target Start/End: Complemental strand, 49699019 - 49698446
Alignment:
| Q |
20 |
ccatgcagtgtagaacactaacaccaccaaaaacatctgccaccatctgcatgccnnnnnnnncaagaaattaacttactaattaagaacaaaatgatta |
119 |
Q |
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| T |
49699019 |
ccatgcagtgtagaacactaacaccaccaaaaacatctgccaccatctgcatgccaaaaaaa-caagaaattaacttactaattaagaacaaaatgatta |
49698921 |
T |
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| Q |
120 |
gtttatacggtttcacgcagatataagaattatataacaaaaattaataac-aagcatacctgtagcgacggtcattgggggagatggttcttcgacgga |
218 |
Q |
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| T |
49698920 |
gtttatacggtttcacgcagatataagaattatataacaaaaattaataacgaagcatacctgtagcgacggtcattgggggagatggttcttcgacgga |
49698821 |
T |
|
| Q |
219 |
gtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccggtgaggctgtacatgctgccatcatcgtgttccgggagaattccatc |
318 |
Q |
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| T |
49698820 |
gtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccagtgaggctgtacatgctgccatcatcgtgttccgggagaattccatc |
49698721 |
T |
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| Q |
319 |
tccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcatttttgcacaccgtagagattag |
418 |
Q |
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| T |
49698720 |
tccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcatttttgcacaccgtagagattag |
49698621 |
T |
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| Q |
419 |
taacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcattatatgattaatcaccat |
518 |
Q |
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| T |
49698620 |
taacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcattatatgattaatcaccat |
49698521 |
T |
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| Q |
519 |
gcaacactagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgttaattgcttcatctc |
593 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49698520 |
gcaacaccagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgttaattgcttcttctc |
49698446 |
T |
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