View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636_low_4 (Length: 446)
Name: NF5636_low_4
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 133 - 440
Target Start/End: Complemental strand, 19024512 - 19024213
Alignment:
| Q |
133 |
ttttccgaacaagccatgaactttgcacacattgcttatgagatgttacaagtaaatttaacttgtgttattggtgaataggaaagaaccaatttccaga |
232 |
Q |
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| T |
19024512 |
ttttccgaacaagccatgaacttcgcacacattgcttatgagatgttacaagtaaatttaacttgtgttattggtgaataggaaagaataaatttccaga |
19024413 |
T |
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| Q |
233 |
cctatatgtcttcatttgcttatttgattgtttttcttcattccgattccttannnnnnnaattattagttgcaaggaagttgattctacaacagcaact |
332 |
Q |
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| T |
19024412 |
cctatatgtcttcatttgcttatttgattgtttttcttcatttgtattccttatt-------ttttttgttgcaagggagttgattctacaacaacaact |
19024320 |
T |
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| Q |
333 |
aaagcacgtgtaatattgaagttcaagcaacggttgaggtaaagggctttggaacgtcggcgactgactcacggtggtgggagagagcttgaagtggtaa |
432 |
Q |
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| T |
19024319 |
aaagcatgtgtaatattgaagttcaa-caacggttgaggtaaagggcttcggaacgttgatatctgactcacggtggtgggagagaacttgaagtggtaa |
19024221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 19024690 - 19024571
Alignment:
| Q |
16 |
acttgaaccttttgttctagatttttagagtcttcaagatcaacttcatcaaaactatttgatgagttataaattgtcaattaaatcataagctttgaat |
115 |
Q |
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| T |
19024690 |
acttgaaccttttgttctagatttttagagtcttcaagatcaacttcatcaaaactatttgttgagttataaattgtcaattaaatcataagctttgaat |
19024591 |
T |
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| Q |
116 |
atttcagcttcatcatattt |
135 |
Q |
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| T |
19024590 |
atttcagcttcatcatattt |
19024571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 22067548 - 22067453
Alignment:
| Q |
16 |
acttgaaccttttgttctagatttttagagtcttcaagatcaacttcatcaaaactatttgatgagttataaattgtcaattaaatcataagcttt |
111 |
Q |
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| T |
22067548 |
acttgaaccttttgttctagatttttagagtcttcaatatcaacttcatcaaaactatttgctgagttataaattgtcaattaaatcataagcttt |
22067453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 19024072 - 19024008
Alignment:
| Q |
71 |
tatttgatgagttataaattgtcaattaaatcataagctttgaatatttcagcttcatcatattt |
135 |
Q |
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| T |
19024072 |
tatttgctgagttataaattgtcaattaaatcataagctttgaatatttcagcttcatcatattt |
19024008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 7202402 - 7202343
Alignment:
| Q |
16 |
acttgaaccttttgttctagatttttagagtcttcaagatcaacttcatcaaaactattt |
75 |
Q |
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| T |
7202402 |
acttgaaccttttgttctagattttgagagtctttgagatcaacttcatcaaaaatattt |
7202343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 7204250 - 7204211
Alignment:
| Q |
96 |
ttaaatcataagctttgaatatttcagcttcatcatattt |
135 |
Q |
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| T |
7204250 |
ttaaatcataagctttgaatatttcagcttcatcatattt |
7204211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 19023955 - 19023909
Alignment:
| Q |
137 |
ccgaacaagccatgaactttgcacacattgcttatgagatgttacaa |
183 |
Q |
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| T |
19023955 |
ccgaacaagccatgaacttttcacacaatgcttatgagatgttacaa |
19023909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 199 - 416
Target Start/End: Complemental strand, 24414243 - 24414033
Alignment:
| Q |
199 |
gttattggtgaataggaaagaaccaatttccagacctatatgtcttcatttgcttatttgattgtttttcttcattccgattccttannnnnnnaattat |
298 |
Q |
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| T |
24414243 |
gttattggtgaataggcaagaaccaatttccagacctatatgtcttcatttgcttatttgattgtttttcttcatttgtattccttatt-------tttt |
24414151 |
T |
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| Q |
299 |
tagttgcaaggaagttgattctacaacagcaactaaagcacgtgtaatattgaagttcaagcaacggttgaggtaaagggctttggaacgtcggcgactg |
398 |
Q |
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| T |
24414150 |
ttgttgcaagggagttgattctacaacagcaattaaagcacgtctaatattgaagttgaagcaacggttgaggtaaagggctttggaacgttggcgactg |
24414051 |
T |
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| Q |
399 |
actcacggtggtgggaga |
416 |
Q |
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| T |
24414050 |
actcacggtggtgggaga |
24414033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 8882350 - 8882409
Alignment:
| Q |
16 |
acttgaaccttttgttctagatttttagagtcttcaagatcaacttcatcaaaactattt |
75 |
Q |
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| T |
8882350 |
acttgaaccttttgttctagattttgagagtctttgagatcaacttcatcaaaaatattt |
8882409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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