View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5636_low_7 (Length: 390)

Name: NF5636_low_7
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5636_low_7
NF5636_low_7
[»] chr7 (3 HSPs)
chr7 (16-258)||(48446808-48447050)
chr7 (290-379)||(48447082-48447171)
chr7 (336-373)||(38821577-38821614)
[»] chr2 (1 HSPs)
chr2 (329-369)||(5171435-5171475)
[»] chr8 (1 HSPs)
chr8 (336-372)||(41787851-41787887)
[»] chr1 (1 HSPs)
chr1 (326-354)||(25175640-25175668)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 48446808 - 48447050
Alignment:
Q  16 atatatacatgcattcattcatttccatattctttatttttctacccctgcttatgatcagatttgctatatcttacatcgctcatgctccacacacttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  48446808 atatatacatgcattcattcatttccatattctttatttttctagccctgcttatgatcagatttgctatatcttacatctctcatgctccacacacctt 48446907  T
Q  116 tcctcctcctttcatctttaagtttgatttcttacactattatttnnnnnnnnnnnnnnnnngaataactaaactataaatgtgaagtttttattggtaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||    
T  48446908 tcctcctcctttcatctttaagtttgatttcttacactattatttaaaaattaaaattaaaagaataactaaactataaatgtgaagtttttattggtaa 48447007  T
Q  216 cttctcaaaagtcagttttcataaatgatattacaattgcagc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48447008 cttctcaaaagtcagttttcataaatgatattacaattgcagc 48447050  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 48447082 - 48447171
Alignment:
Q  290 tatttttagggtcatgctagggagagatagttaatgaacaaaaaaggtaaattttatattgaaaataatattttttacactttaagtatt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  48447082 tatttttagggtcatgctagggagagatagttaatgaacaaaaaaggtaaattttgtattgaaaataacattttttacactttaagtatt 48447171  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 38821577 - 38821614
Alignment:
Q  336 gtaaattttatattgaaaataatattttttacacttta 373  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  38821577 gtaaattttgtattgaaaagaatattttttacacttta 38821614  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 5171435 - 5171475
Alignment:
Q  329 aaaaaaggtaaattttatattgaaaataatattttttacac 369  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  5171435 aaaaaaagtaaattttatattgaaaataatattttttacac 5171475  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 41787851 - 41787887
Alignment:
Q  336 gtaaattttatattgaaaataatattttttacacttt 372  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  41787851 gtaaattttacattgaaaataacattttttacacttt 41787887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 25175640 - 25175668
Alignment:
Q  326 aacaaaaaaggtaaattttatattgaaaa 354  Q
    |||||||||||||||||||||||||||||    
T  25175640 aacaaaaaaggtaaattttatattgaaaa 25175668  T

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