View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5636_low_8 (Length: 374)
Name: NF5636_low_8
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 173 - 370
Target Start/End: Complemental strand, 26075670 - 26075468
Alignment:
| Q |
173 |
gctaacctcagtaaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatggga |
272 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26075670 |
gctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcagttgttgaatattatgttaatggga |
26075571 |
T |
|
| Q |
273 |
accaagatgctctcaaaccttttcccggtggc-----tcgataaccttgtttctatgtcttagttgttgttcaaaaacataaccaacacgtatacctatg |
367 |
Q |
| |
|
|| |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26075570 |
actaagatgctctgaaaccttttcccgatggcacacatcgataaccttgtttctatgtcttagttgttgttcaaaaacataaccaacacgtatacttatg |
26075471 |
T |
|
| Q |
368 |
ctt |
370 |
Q |
| |
|
||| |
|
|
| T |
26075470 |
ctt |
26075468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 173 - 370
Target Start/End: Complemental strand, 26084264 - 26084062
Alignment:
| Q |
173 |
gctaacctcagtaaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatggga |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26084264 |
gctaacctcagtaaattgaaaccggttattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatactatgttaatggga |
26084165 |
T |
|
| Q |
273 |
accaagatgctctcaaaccttttcccggtgg-----ctcgataaccttgtttctatgtcttagttgttgttcaaaaacataaccaacacgtatacctatg |
367 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |||||| || |||||| |||| |
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| T |
26084164 |
accaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttctatgtcttagttgttgttctaaaacttaaccagcatgtatacttatg |
26084065 |
T |
|
| Q |
368 |
ctt |
370 |
Q |
| |
|
||| |
|
|
| T |
26084064 |
ctt |
26084062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 173 - 370
Target Start/End: Complemental strand, 26119826 - 26119627
Alignment:
| Q |
173 |
gctaacctcagtaaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatggga |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26119826 |
gctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttacgcgaatgaaagcagttgttgaatattatgttaatggga |
26119727 |
T |
|
| Q |
273 |
accaagatgctctcaaaccttttcccggtgg-----ctcgataaccttgtttctatgtcttagttgttgttcaaaaacataaccaacacgtatacctatg |
367 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| || |||||||||||||| |||| | ||| ||||| |||| |
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| T |
26119726 |
accaagatgctctcaaaccttttcccgatggcacacctcgataaccttgt---tatgtctaagctgttgttcaaaaacttaacgagcacctatacttatg |
26119630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 26096539 - 26096362
Alignment:
| Q |
173 |
gctaacctcagtaaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatggga |
272 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
26096539 |
gctaacctcagtaaattgaaaccggtaattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatggga |
26096440 |
T |
|
| Q |
273 |
accaagatgctctcaaaccttttcccggtgg-----ctcgataaccttgtttctatgtcttagttgttgttcaaaaac |
345 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||| | ||||| ||||||||||||||||| |
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|
| T |
26096439 |
accaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaac |
26096362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 173 - 330
Target Start/End: Complemental strand, 26064539 - 26064377
Alignment:
| Q |
173 |
gctaacctcagtaaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatggga |
272 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26064539 |
gctaaactcagtaaattgaaaccggtaattattcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatattatgttaatggga |
26064440 |
T |
|
| Q |
273 |
accaagatgctctcaaaccttttcccggtggctc-----gataaccttgtttctatgtcttag |
330 |
Q |
| |
|
|||||||||||||||||||||| || | |||||| | ||||||||||||| |||||||| |
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|
| T |
26064439 |
accaagatgctctcaaacctttccctgatggctcaaagtggtaaccttgtttctgtgtcttag |
26064377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 173 - 370
Target Start/End: Complemental strand, 26126483 - 26126281
Alignment:
| Q |
173 |
gctaacctcagtaaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatggga |
272 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26126483 |
gctaaactcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatactatgttaatggga |
26126384 |
T |
|
| Q |
273 |
accaagatgctctcaaaccttttcccggtgg-----ctcgataaccttgtttctatgtcttagttgttgttcaaaaacataaccaacacgtatacctatg |
367 |
Q |
| |
|
|||||||||||||||||||||| | | ||| || ||||||||||||||| ||||||||||||| |||||| || |||| | ||| ||||| |||| |
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|
| T |
26126383 |
accaagatgctctcaaacctttctcggatggcacaccttgataaccttgtttctgtgtcttagttgttcttcaaatacttaacgagcacctatacttatg |
26126284 |
T |
|
| Q |
368 |
ctt |
370 |
Q |
| |
|
||| |
|
|
| T |
26126283 |
ctt |
26126281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 26035891 - 26035770
Alignment:
| Q |
173 |
gctaacctcagtaaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatggga |
272 |
Q |
| |
|
||||||||||||||||||||||| || ||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
26035891 |
gctaacctcagtaaattgaaaccagtaattgttcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgtcgaatattatgtcaatggga |
26035792 |
T |
|
| Q |
273 |
accaagatgctctcaaaccttt |
294 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
26035791 |
aacaagatgctctcaaaccttt |
26035770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 26087191 - 26087084
Alignment:
| Q |
22 |
atgattagttaacgatgttttatctagagaatacgatcttcttattcttgtttcagtacctacactgcacaaaccaaaatacatgtttaaacaactcact |
121 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26087191 |
atgattagttaatgatgttttatctcgagaatatgatcttcttattcttgtttcagcacttacactgcacaaaccaaaatacatgtttaaacaactcact |
26087092 |
T |
|
| Q |
122 |
ttatttac |
129 |
Q |
| |
|
|||||||| |
|
|
| T |
26087091 |
ttatttac |
26087084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 26047003 - 26046897
Alignment:
| Q |
17 |
attagatgattagttaacgatgttttatcta-gagaatacgatcttcttattcttgtttcagtacctacactgcacaaaccaaaatacatgtttaaacaa |
115 |
Q |
| |
|
||||||||||||||||| ||||||| | || |||||||||| ||| ||| | |||| || || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
26047003 |
attagatgattagttaatgatgtttaacctttgagaatacgaactt---attttggttttagcacttacattgcacaaaccaaaatacatgtttaaacaa |
26046907 |
T |
|
| Q |
116 |
ctcactttat |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
26046906 |
ctcactttat |
26046897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 26052184 - 26052078
Alignment:
| Q |
17 |
attagatgattagttaacgatgttttatcta-gagaatacgatcttcttattcttgtttcagtacctacactgcacaaaccaaaatacatgtttaaacaa |
115 |
Q |
| |
|
||||||||||||||||| ||||||| | || |||||||||| ||| ||| | |||| || || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
26052184 |
attagatgattagttaatgatgtttaacctttgagaatacgaactt---attttggttttagcacttacattgcacaaaccaaaatacatgtttaaacaa |
26052088 |
T |
|
| Q |
116 |
ctcactttat |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
26052087 |
ctcactttat |
26052078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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