View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5636_low_9 (Length: 334)
Name: NF5636_low_9
Description: NF5636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5636_low_9 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 39189118 - 39189428
Alignment:
| Q |
18 |
gttttatccaaagcaagttttgattctagtgcatcaagatcggcaccctgtccccattcactttctacaacatcaaccttaaagttgaggcgtttttgtt |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
39189118 |
gttttatccgaagcaagttttgattctagtgcatcaagatcggcaccctgtccccattcactttctacaacatcaactttaaagttgagccgtttttgtt |
39189217 |
T |
|
| Q |
118 |
gttcaatccaaagcaagctgaattggccaattaggaaagatacggtacgatccccaggagacaatgtatttgtcaatgcactctcccatgcaccggtacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39189218 |
gttcaatccaaagcaagctgaattggccaattagaaaagatacggtacgatccccaggagacaatgtatttgtcaatgcactctcccatgcaccggtacc |
39189317 |
T |
|
| Q |
218 |
tgaaatgnnnnnnnnnnnnnnnnnntaaatgaacgatcataacataaattataattgtcgaaaagcttatctat-aaattaacgaaatttcaatataatt |
316 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
39189318 |
tgagatg-------aaaaagaaaaataaatgaacgatcataacataaattataagtgttgaaaaacttatctataaaattaacaaaatttcaatataatt |
39189410 |
T |
|
| Q |
317 |
catgaaattgaaagtttt |
334 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
39189411 |
tatgaaattgaaagtttt |
39189428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 28460076 - 28460278
Alignment:
| Q |
18 |
gttttatccaaagcaagttttgattctagtgcatcaagatcggcaccctgtccccattcactttctacaacatcaaccttaaagttgaggcgtttttgtt |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
28460076 |
gttttatctgaagcaagttttgattctagagcatcaagatcgacaccttgaccccattcactttctacaacatcaatcttaaagttgaggcatttttgtt |
28460175 |
T |
|
| Q |
118 |
gttcaatccaaagcaagctgaattggccaattaggaaagatacggtacgatccccaggagacaatgtatttgtcaatgcactctcccatgcaccggtacc |
217 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28460176 |
gttcaatccaaagcaaactgaattggccaatta--aaaaatacactacgatccccaagagacaatgtatttgtcaatgcactctcccatgcaccgatacc |
28460273 |
T |
|
| Q |
218 |
tgaaa |
222 |
Q |
| |
|
||||| |
|
|
| T |
28460274 |
tgaaa |
28460278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 41261030 - 41260830
Alignment:
| Q |
18 |
gttttatccaaagcaagttttgattctagtgcatcaagatcggcaccctgtccccattcactttctacaacatcaaccttaaagttgaggcgtttttgtt |
117 |
Q |
| |
|
||||||||| |||||||||| ||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41261030 |
gttttatccgaagcaagttta-attctagagcttcaagattggcaccctgtccccattcactttctacaacatcaaccttaaagttgaggcgtttttgtt |
41260932 |
T |
|
| Q |
118 |
gttcaatccaaagcaagctgaattggccaattaggaaagatacggtacgatccccaggagacaatgtatttgtcaatgcactctcccatgcaccggtacc |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
41260931 |
gttcaatccaaagcaaactgaattggccaattagaaaagatatagtacgatacccaggagacattgtatttgtcagtgcactctcctatgcaccagtacc |
41260832 |
T |
|
| Q |
218 |
tg |
219 |
Q |
| |
|
|| |
|
|
| T |
41260831 |
tg |
41260830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 41260824 - 41260733
Alignment:
| Q |
244 |
aaatgaacgatcataacataaattataattgtcgaaaagcttatcta-taaattaacgaaatttcaatataattcatgaaattgaaagtttt |
334 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||| | | ||| || | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41260824 |
aaatgaacgatcaaaacttaaattataagtgtcggataacttgtcgagaaaattaacgaaatttcaatataattcatgaaattgaaagtttt |
41260733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 28460295 - 28460376
Alignment:
| Q |
254 |
tcataacataaattataattgtcgaaaagctt-atctataaa-ttaacgaaatttcaatataattcatgaaattgaaagttt |
333 |
Q |
| |
|
||||||| |||||||||| ||||| | | ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28460295 |
tcataacttaaattataagtgtcggacaacttgatctataaaattaacgaaatttcaatataattcatgaaattgaaagttt |
28460376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 16791076 - 16790883
Alignment:
| Q |
28 |
aagcaagttttgattctagtgcatcaagatcggcaccctgtccccattcactttctacaacatcaaccttaaagttgaggcgtttttgttgttcaatcca |
127 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||| | |||||||||||||| |||||||| || ||||| || ||||||| || || |||| ||| |
|
|
| T |
16791076 |
aagcaagttttgattctagaatgtcgagatcagcaccacggccccattcactttccacaacatcgacattaaatttaaggcgttgctgctgatcaaccca |
16790977 |
T |
|
| Q |
128 |
aagcaagctgaattggccaattaggaaagatacggtacgatccccaggagacaatgtatttgtcaatgcactctcccatgcaccggtacctgaa |
221 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||| ||||||| ||||| |||||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
16790976 |
aagcaaactgaattggccaatcacgaaagatacaatacgatctccaggtgacaatgtgtttgtcagagcactctcccaagcaccggtacctgaa |
16790883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University