View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5637-Insertion-1 (Length: 226)
Name: NF5637-Insertion-1
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5637-Insertion-1 |
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| [»] chr1 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 38117811 - 38117593
Alignment:
| Q |
8 |
gatattaccacacatgaaatctactgaattaattcaatgttcactaacaaagaacttatatttaacagtgcactaatgggttccaggtaaagtttaagac |
107 |
Q |
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| T |
38117811 |
gatattaccacacatgaaatctactgaattaattcaatgttcactaacaaagaacttatatttaacagtgcactaatgggttccaggtaaaggttaagac |
38117712 |
T |
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| Q |
108 |
gacatattataaacctcataaattttcacttaatcagtagacgttggaaaacctgctactaaacatctcaatatcaaccctctaaaaaatgccaggctat |
207 |
Q |
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| T |
38117711 |
gacatattataaacctcataaattttcacttaatcagtagacgttggaaaacctgctactaaacatctcaatatcaaccctctaaaaaatgccaggctat |
38117612 |
T |
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| Q |
208 |
agcaaagctcaaatcatca |
226 |
Q |
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| T |
38117611 |
agcaaagctcaaatcatca |
38117593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 38161539 - 38161371
Alignment:
| Q |
63 |
ttatatttaacagtgcactaatgggttccaggtaaagtttaagacgacatattataaacctcataaattttcacttaatcagtagacgttggaaaacctg |
162 |
Q |
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| T |
38161539 |
ttatttttaacagtgcacaaatgggttccaggtaaaggttaagaagacatattataaacctcataaacattcatttaatcagtagacgttggaaaacatg |
38161440 |
T |
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| Q |
163 |
ctactaaa----ca-tctcaatatcaaccctctaaaaaatgccaggctatagcaaagctcaaatcatca |
226 |
Q |
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| T |
38161439 |
ctattaaaatgtcattctcaatatcaaccctttaaaatatgctaggatttagcaaagctcaaattatca |
38161371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 38139913 - 38139875
Alignment:
| Q |
132 |
ttcacttaatcagtagacgttggaaaacctgctactaaa |
170 |
Q |
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| T |
38139913 |
ttcatttaatcagtagacgttggaaaacctgctactaaa |
38139875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 49005466 - 49005353
Alignment:
| Q |
118 |
aaacctcataaattttcacttaatcagtagacgttggaaaacctgctactaaa----ca-tctcaatatcaaccctctaaaaaatgccaggctatagcaa |
212 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||| || ||||||||| |||||| ||||| |||| ||||| |||||| |
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| T |
49005466 |
aaacctcataaattttcatttaatcagtagacgtttgaaaacctgctactaaaatctcattctcaatattaaccctttaaaatatgctaggctttagcaa |
49005367 |
T |
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| Q |
213 |
agctcaaatcatca |
226 |
Q |
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| T |
49005366 |
agctcaaatcatca |
49005353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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