View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5637-Insertion-10 (Length: 127)
Name: NF5637-Insertion-10
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5637-Insertion-10 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0889 (1 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-51
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 24071684 - 24071803
Alignment:
| Q |
8 |
cctccttgtctcagcawgcggaatgcaagtgcaacttgatagagttcatggctactcataagatcaataggattggtgttcaatatcaaatgcaagtttt |
107 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
24071684 |
cctccttgtctgagcaagcggaatgcaagtgcaacttgatagagttcatggctactcacaaaatcaataggattggtgttcaatatcaaatgcaagtttt |
24071783 |
T |
|
| Q |
108 |
caagagccactttgatctcg |
127 |
Q |
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|||||||| ||||||||||| |
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| T |
24071784 |
caagagccgctttgatctcg |
24071803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-41; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-41
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 28580056 - 28580174
Alignment:
| Q |
8 |
cctccttgtctcagcawgcggaatgcaagtgcaacttgatagagttcatggctactcataagatcaataggattggtgttcaatatcaaatgcaagtttt |
107 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | || ||||||||||||| |||||||||||||||| | |||| |
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| T |
28580056 |
cctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctacttacaaaatcaataggattgttgttcaatatcaaatgtagttttt |
28580155 |
T |
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| Q |
108 |
caagagccactttgatctc |
126 |
Q |
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||||||||||||||||||| |
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| T |
28580156 |
caagagccactttgatctc |
28580174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-39
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 28575003 - 28575121
Alignment:
| Q |
8 |
cctccttgtctcagcawgcggaatgcaagtgcaacttgatagagttcatggctactcataagatcaataggattggtgttcaatatcaaatgcaagtttt |
107 |
Q |
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|||||||||||||||| |||||||||||||| || || |||||||||||||||| ||| || |||||||||||||||||||||||||||||| | |||| |
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| T |
28575003 |
cctccttgtctcagcaagcggaatgcaagtgaaaattcatagagttcatggctattcacaaaatcaataggattggtgttcaatatcaaatgtagctttt |
28575102 |
T |
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| Q |
108 |
caagagccactttgatctc |
126 |
Q |
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||||||||||||||||||| |
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| T |
28575103 |
caagagccactttgatctc |
28575121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-38
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 28568160 - 28568275
Alignment:
| Q |
8 |
cctccttgtctcagcawgcggaatgcaagtgcaacttgatagagttcatggctactcataagatca---ataggattggtgttcaatatcaaatgcaagt |
104 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||| |||||||||||||||||||||||||||| | |
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| T |
28568160 |
cctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaattataggattggtgttcaatatcaaatgcagat |
28568259 |
T |
|
| Q |
105 |
tttcaagagccacttt |
120 |
Q |
| |
|
|||||||||||||||| |
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| T |
28568260 |
tttcaagagccacttt |
28568275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 5e-34
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 28586213 - 28586331
Alignment:
| Q |
8 |
cctccttgtctcagcawgcggaatgcaagtgcaacttgatagagttcatggctactcataagatcaataggattggtgttcaatatcaaatgcaagtttt |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| || |||||| | ||||||||||||| ||||||| | |||| |
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| T |
28586213 |
cctccttgtctcagcaagcggaatgcaagtgcaacttcatagatttcatggctactcgcaaaatcaattgaattggtgttcaatgtcaaatgtagctttt |
28586312 |
T |
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| Q |
108 |
caagagccactttgatctc |
126 |
Q |
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||||||||||||||||||| |
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| T |
28586313 |
caagagccactttgatctc |
28586331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-31
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 26316061 - 26316179
Alignment:
| Q |
8 |
cctccttgtctcagcawgcggaatgcaagtgcaacttgatagagttcatggctactcataagatcaataggattggtgttcaatatcaaatgcaagtttt |
107 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||||| ||| | || | |
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| T |
26316061 |
cctccttgtctgagcaagcggaatgcaagtgcaacttcgtagagttcatggatactcataaaatcattaggattggtgttcaatatcgaatatagcttct |
26316160 |
T |
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| Q |
108 |
caagagccactttgatctc |
126 |
Q |
| |
|
||||||||||||||||||| |
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| T |
26316161 |
caagagccactttgatctc |
26316179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 20618407 - 20618496
Alignment:
| Q |
8 |
cctccttgtctcagcawgcggaatgcaagtgcaacttgatagagttcatggctactcataagatcaataggattggtgttcaatatcaaa |
97 |
Q |
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||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| | || |||||| |||||| || ||||||||||| |
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| T |
20618407 |
cctccttgtctgagcaaacggaatgcaagtgcaacttcatagagttcatggctactaacaaaatcaattggattgctgctcaatatcaaa |
20618496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 77; Significance: 2e-36; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 4725 - 4613
Alignment:
| Q |
8 |
cctccttgtctcagcawgcggaatgcaagtgcaacttgatagagttcatggctactcataagatca---ataggattggtgttcaatatcaaatgcaagt |
104 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||| |||||||||||||||||||||||||||| | |
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| T |
4725 |
cctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaattataggattggtgttcaatatcaaatgcagat |
4626 |
T |
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| Q |
105 |
tttcaagagccac |
117 |
Q |
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||||||||||||| |
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| T |
4625 |
tttcaagagccac |
4613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 77; Significance: 2e-36; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 4929 - 4817
Alignment:
| Q |
8 |
cctccttgtctcagcawgcggaatgcaagtgcaacttgatagagttcatggctactcataagatca---ataggattggtgttcaatatcaaatgcaagt |
104 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||| |||||||||||||||||||||||||||| | |
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| T |
4929 |
cctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaattataggattggtgttcaatatcaaatgcagat |
4830 |
T |
|
| Q |
105 |
tttcaagagccac |
117 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4829 |
tttcaagagccac |
4817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 2600872 - 2600819
Alignment:
| Q |
8 |
cctccttgtctcagcawgcggaatgcaagtgcaacttgatagagttcatggcta |
61 |
Q |
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||||||||||| |||| ||| |||| ||| ||||||| || ||||||||||||| |
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|
| T |
2600872 |
cctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggcta |
2600819 |
T |
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