View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5637-Insertion-2 (Length: 1170)

Name: NF5637-Insertion-2
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5637-Insertion-2
NF5637-Insertion-2
[»] chr2 (6 HSPs)
chr2 (7-912)||(6040169-6041063)
chr2 (7-293)||(6045408-6045694)
chr2 (130-204)||(6052180-6052254)
chr2 (130-198)||(6133649-6133717)
chr2 (508-563)||(6858648-6858703)
chr2 (136-195)||(6037198-6037257)
[»] chr4 (3 HSPs)
chr4 (628-702)||(4710282-4710356)
chr4 (628-704)||(42451820-42451896)
chr4 (628-689)||(53214299-53214359)
[»] chr3 (1 HSPs)
chr3 (623-704)||(42448740-42448821)
[»] chr1 (1 HSPs)
chr1 (628-691)||(46150456-46150517)
[»] chr8 (11 HSPs)
chr8 (628-702)||(24190789-24190863)
chr8 (628-702)||(33729373-33729447)
chr8 (630-691)||(28009213-28009274)
chr8 (630-691)||(28066516-28066577)
chr8 (628-704)||(36110383-36110459)
chr8 (644-691)||(28008615-28008662)
chr8 (644-691)||(28065918-28065965)
chr8 (511-545)||(150799-150833)
chr8 (645-702)||(41720833-41720890)
chr8 (508-562)||(15908910-15908964)
chr8 (646-704)||(26218157-26218215)
[»] chr7 (2 HSPs)
chr7 (626-701)||(48582276-48582351)
chr7 (516-562)||(6716283-6716329)
[»] chr5 (2 HSPs)
chr5 (490-563)||(35147500-35147572)
chr5 (628-681)||(17092581-17092634)
[»] chr6 (3 HSPs)
chr6 (654-701)||(31427267-31427314)
chr6 (628-691)||(35108292-35108355)
chr6 (636-702)||(7723678-7723744)


Alignment Details
Target: chr2 (Bit Score: 724; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 7 - 912
Target Start/End: Complemental strand, 6041063 - 6040169
Alignment:
Q  7 acggagaagatcgtcggtaccaaaatactcgatattgatatcggtcacatgaccggagctgtaatgaacggcgcgttggcacaaaagctccaaatactcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6041063 acggagaagatcgtcggtaccaaaatactcgatattgatatcggtcacatgaccggagctgtaatgaacggcgcgttggcacaaaagctccaaatactcg 6040964  T
Q  107 tcggtgccaaggtcagtcccgatattgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacattatgagcac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6040963 tcggtgccaaggtcagtcccgatattgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacattatgagcac 6040864  T
Q  207 gatgaagggtatcaattgttccaagcttctcgaaaacggttaataccacatcttttggaagatccagccaatttcgttctccggaattgagtactgctct 306  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6040863 gatgaagggtatcaattgttccaagcttctcgaaaatggttaataccacatcttttggaagatccagccaatttcgttctccggaattgagtactgctct 6040764  T
Q  307 ccaattcaaccaaaatgaagaagatggtggttctggcgataaagactccattcataaattggattgtgctctccgttcatacaattgatttttgttttac 406  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6040763 ccaattcaaccaaaatgaagaagatggtggttctggtgataaagaccccattcataaattggattgtgctctccgttcatacaattgatttttgttttac 6040664  T
Q  407 gaatggcgagaaccgaagaagaaagagatggaaaatgggtatcagttttttatgaggcccacttcatcccgagttc-ttataacaattatgctcttctac 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||    
T  6040663 gaatggcgagaaccgaagaagaaagagatggaaaatgggtatcagttttttatgaggcccatttcatcccgagttctttataacaattatgctcctctac 6040564  T
Q  506 caaactgtttttgctcgctctcaactgaaaagacgtaattacccatgcgtgacttaagcttataaatcgtgcctgagttaactcacgtaggttataaatt 605  Q
    | |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||      
T  6040563 c-aactgtttttgctcgctcacaactgaaaagacgtaattatccatgcgtgacttaagcttataaattgtgccttagttaactcaggtaggttataaa-- 6040467  T
Q  606 aagtcacgtaggctgcgtcgtaacttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaattcttc 705  Q
          | ||        ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6040466 -----ccata--------cgtgacttaagtcacgcattgatattttcaaaagtttggtttggagcgagcaattttttatggaagaaaaccagaattcttc 6040380  T
Q  706 ttacaataattgggtaagcccattcattatctagctcttgcaaaatgaaaattgcttttctcacaccatcatgtttcctccaacgacagttaatttccgt 805  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6040379 ttacaataattgggtaagcccattcattatctagctattgcaaaatgaaaattgcttttctcacaccatcatgtttcctccaacgacagttaacttccgt 6040280  T
Q  806 tgggaattaacaacaatattagccagtggcaattatctgccactaggggta-tattatttataacttttg-aatgttatccaaacatct-aaaatc-ata 901  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| |||||| |||    
T  6040279 tgggaattaacaacaatattagccaatcgcaattatctgccactaggggtattattatttataacttttgaaatgttatccgaacatctaaaaatcaata 6040180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 6045694 - 6045408
Alignment:
Q  7 acggagaagatcgtcggtaccaaaatactcgatattgatatcggtcacatgaccggagctgtaatgaacggcgcgttggcacaaaagctccaaatactcg 106  Q
    |||||||||||| ||||||||||||||||||||||||||||||||  | || ||||||||||||| ||||||||||||||| |||| ||| |||||   |    
T  6045694 acggagaagatcatcggtaccaaaatactcgatattgatatcggttgcttggccggagctgtaatcaacggcgcgttggcataaaatctctaaataaaag 6045595  T
Q  107 tcggtgccaaggtcagtcccgatattgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacattatgagcac 206  Q
    |||| ||  |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  6045594 tcggagctgaggtcagtaccgatgttgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacgttatgagcgc 6045495  T
Q  207 gatgaagggtatcaattgttccaagcttctcgaaaacggttaataccacatcttttggaagatccagccaatttcgttctccggaat 293  Q
    |||| ||   ||| || ||   ||| |||  ||||| ||||||||| ||||||  ||||||||||| ||| ||||| ||||| ||||    
T  6045494 gatggagaagatcgatcgtgtgaagtttccggaaaatggttaatacgacatctgatggaagatccaaccagtttcgctctccagaat 6045408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 6052254 - 6052180
Alignment:
Q  130 attgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacattatgagc 204  Q
    |||||||||||  |||||| || |||| ||||| || || ||||||||||||||||||||||||||||| |||||    
T  6052254 attgggcatgttaatggtgcgaaagagaaaagggtctttggagattttgcgccatgtggtgcaaacattgtgagc 6052180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 6133649 - 6133717
Alignment:
Q  130 attgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacatt 198  Q
    ||||||||||| ||| ||| |||||||| || | ||||||||||||| ||||||| |||||||||||||    
T  6133649 attgggcatgttgatagtgcgatagagggaatggtcctttgagatttcgcgccatatggtgcaaacatt 6133717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Original strand, 6858648 - 6858703
Alignment:
Q  508 aactgtttttgctcgctctcaactgaaaagacgtaattacccatgcgtgacttaag 563  Q
    ||||||||||||||  ||||||||||||||| |||||||| |||| ||||||||||    
T  6858648 aactgtttttgctcattctcaactgaaaagatgtaattactcatgtgtgacttaag 6858703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 6037257 - 6037198
Alignment:
Q  136 catgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaac 195  Q
    ||||||||||||  ||||||||||||| || || |||||||||||||| || ||||||||    
T  6037257 catgtcgatggtacgatagaggaaagggtctttggagattttgcgccacgtagtgcaaac 6037198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 628 - 702
Target Start/End: Complemental strand, 4710356 - 4710282
Alignment:
Q  628 acttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaattc 702  Q
    |||||||||||||||  ||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  4710356 acttaagtcacgcatgagtattttcaaaagtttggttgggagcgagcaattttttatgggagaagagcagaattc 4710282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 628 - 704
Target Start/End: Complemental strand, 42451896 - 42451820
Alignment:
Q  628 acttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaattctt 704  Q
    ||||||||||| |||  |||||||  ||||||||||| ||||| |||||||||||||||||||| | || |||||||    
T  42451896 acttaagtcacacatgagtattttcgaaagtttggttgggagcaagcaattttttatgggagaagagcataattctt 42451820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 689
Target Start/End: Complemental strand, 53214359 - 53214299
Alignment:
Q  628 acttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggag 689  Q
    ||||||||||||||| | ||||||  ||||||| ||| |||||||||||||||| |||||||    
T  53214359 acttaagtcacgcat-gatattttcgaaagtttagttgggagcgagcaatttttgatgggag 53214299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 623 - 704
Target Start/End: Original strand, 42448740 - 42448821
Alignment:
Q  623 tcgtaacttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaattctt 704  Q
    |||| |||||||| |||||| |||||||||  |||||||||| |||||||||||||||||||||||||  | ||||||||||    
T  42448740 tcgtgacttaagttacgcatgggtatttttggaagtttggttgggagcgagcaattttttatgggagacgagcagaattctt 42448821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 628 - 691
Target Start/End: Original strand, 46150456 - 46150517
Alignment:
Q  628 acttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaa 691  Q
    |||||||| |||||||||||||||||||||||||||| |||||||  ||||||| |||||||||    
T  46150456 acttaagtgacgcattggtatttttaaaagtttggttgggagcga--aatttttgatgggagaa 46150517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 628 - 702
Target Start/End: Complemental strand, 24190863 - 24190789
Alignment:
Q  628 acttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaattc 702  Q
    |||||| |||||||  |||||||||  |||||||||| ||||| |||||||||||||||||||| | ||||||||    
T  24190863 acttaaatcacgcaggggtattttttgaagtttggttgggagcaagcaattttttatgggagaagagcagaattc 24190789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 628 - 702
Target Start/End: Original strand, 33729373 - 33729447
Alignment:
Q  628 acttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaattc 702  Q
    |||||||||| |||   ||||||||||||||||| || |||||||||||||||| ||||||||| | ||||||||    
T  33729373 acttaagtcatgcaagagtatttttaaaagtttgattgggagcgagcaatttttaatgggagaagagcagaattc 33729447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 630 - 691
Target Start/End: Original strand, 28009213 - 28009274
Alignment:
Q  630 ttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaa 691  Q
    |||| |||||||  ||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  28009213 ttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaa 28009274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 630 - 691
Target Start/End: Original strand, 28066516 - 28066577
Alignment:
Q  630 ttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaa 691  Q
    |||| |||||||  ||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  28066516 ttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaa 28066577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 628 - 704
Target Start/End: Original strand, 36110383 - 36110459
Alignment:
Q  628 acttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaattctt 704  Q
    ||||||||||||||   |||||||  |||||||| || ||||||| ||||||||||||||||||||  |||||||||    
T  36110383 acttaagtcacgcaaaagtattttcgaaagtttgattgggagcgaacaattttttatgggagaaaagtagaattctt 36110459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 644 - 691
Target Start/End: Complemental strand, 28008662 - 28008615
Alignment:
Q  644 ggtatttttaaaagtttggtttggagcgagcaattttttatgggagaa 691  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||||    
T  28008662 ggtatttttaaaagttttgttgggatcgagcaattttttatgggagaa 28008615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 644 - 691
Target Start/End: Complemental strand, 28065965 - 28065918
Alignment:
Q  644 ggtatttttaaaagtttggtttggagcgagcaattttttatgggagaa 691  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||||    
T  28065965 ggtatttttaaaagttttgttgggatcgagcaattttttatgggagaa 28065918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 511 - 545
Target Start/End: Original strand, 150799 - 150833
Alignment:
Q  511 tgtttttgctcgctctcaactgaaaagacgtaatt 545  Q
    |||||||||||||||||||||||||||||||||||    
T  150799 tgtttttgctcgctctcaactgaaaagacgtaatt 150833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 645 - 702
Target Start/End: Complemental strand, 41720890 - 41720833
Alignment:
Q  645 gtatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaattc 702  Q
    ||||||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||||    
T  41720890 gtattttcaaaagtttagttaggagcgaacaatttttgatgggagaaaagcagaattc 41720833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 15908910 - 15908964
Alignment:
Q  508 aactgtttttgctcgctctcaactgaaaagacgtaattacccatgcgtgacttaa 562  Q
    ||||||||||||||| || |||||||||||||  |||||||||||| ||| ||||    
T  15908910 aactgtttttgctcgttcccaactgaaaagacaaaattacccatgcatgagttaa 15908964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 646 - 704
Target Start/End: Original strand, 26218157 - 26218215
Alignment:
Q  646 tatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaattctt 704  Q
    |||||| |||| ||||||| ||||||||||| ||||  |||||||||| ||||||||||    
T  26218157 tattttcaaaaatttggttgggagcgagcaacttttgttgggagaaaagcagaattctt 26218215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 626 - 701
Target Start/End: Original strand, 48582276 - 48582351
Alignment:
Q  626 taacttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaatt 701  Q
    ||||||||||||| ||  ||||||||  ||||||||||| ||||| |||||||||| ||||||||| | |||||||    
T  48582276 taacttaagtcacacaaaggtattttcgaaagtttggttgggagcaagcaatttttgatgggagaagagcagaatt 48582351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 516 - 562
Target Start/End: Complemental strand, 6716329 - 6716283
Alignment:
Q  516 ttgctcgctctcaactgaaaagacgtaattacccatgcgtgacttaa 562  Q
    ||||||||||||||||||||||||| |||||||| || |||| ||||    
T  6716329 ttgctcgctctcaactgaaaagacgcaattacccttgtgtgagttaa 6716283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 490 - 563
Target Start/End: Original strand, 35147500 - 35147572
Alignment:
Q  490 aattatgctcttctaccaaactgtttttgctcgctctcaactgaaaagacgtaattacccatgcgtgacttaag 563  Q
    |||| ||||||||| |||| || |||||| ||||||||||||||||||| |||||||||  ||| |||||||||    
T  35147500 aattctgctcttctcccaa-ctatttttgttcgctctcaactgaaaagatgtaattacctttgcatgacttaag 35147572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 681
Target Start/End: Original strand, 17092581 - 17092634
Alignment:
Q  628 acttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttt 681  Q
    |||||||||| |||   |||||||||||||||||||| ||||| ||||||||||    
T  17092581 acttaagtcatgcaagagtatttttaaaagtttggttgggagctagcaattttt 17092634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 654 - 701
Target Start/End: Complemental strand, 31427314 - 31427267
Alignment:
Q  654 aaagtttggtttggagcgagcaattttttatgggagaaaaccagaatt 701  Q
    ||||||||||| |||||||||||||||| ||||||||| | |||||||    
T  31427314 aaagtttggttaggagcgagcaatttttgatgggagaagagcagaatt 31427267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 628 - 691
Target Start/End: Complemental strand, 35108355 - 35108292
Alignment:
Q  628 acttaagtcacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaa 691  Q
    |||||||||||||||  ||||||| | |||||||||| | |||||||||||||| |||| ||||    
T  35108355 acttaagtcacgcatgagtattttcagaagtttggttggaagcgagcaatttttgatggaagaa 35108292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 636 - 702
Target Start/End: Complemental strand, 7723744 - 7723678
Alignment:
Q  636 cacgcattggtatttttaaaagtttggtttggagcgagcaattttttatgggagaaaaccagaattc 702  Q
    ||||||| |||||||| | |||||||||| ||| |||||||||||| || |||||| | ||||||||    
T  7723744 cacgcatcggtattttcagaagtttggttgggaacgagcaatttttgataggagaagagcagaattc 7723678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University