View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5637-Insertion-3 (Length: 975)
Name: NF5637-Insertion-3
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5637-Insertion-3 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold1004 (1 HSPs) |
| | |
|
| [»] scaffold0760 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 890; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 890; E-Value: 0
Query Start/End: Original strand, 10 - 968
Target Start/End: Complemental strand, 33028002 - 33027041
Alignment:
| Q |
10 |
atatatatgcagctgaaacaaactaactacgttgaaccattttcaaattatgactcaactatgttttgttgaagtcgttgacgacttgacgtatgactag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33028002 |
atatatatgcagctgaaacaaactaactacgttgaaccattttcaaattatgactcaactatgttttgttaaagtcgttgacgacttgacgtatgactag |
33027903 |
T |
|
| Q |
110 |
atctttgaagtagcctggcttgctctatgtaatctaatttatatttgtaacctcagtatctcagtatctcactcaatcaattaccaaaatgttggaacat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33027902 |
atctttgaagtagcctggcttgctctatgtaatctaatttatatttgtaacctcaatatctcagtatctcactcaatcaattaccaaaatgttggaacat |
33027803 |
T |
|
| Q |
210 |
gcatgttgaatgcttctaagctccataatgatgcaaggttaacatgaactaacaacaaagcttagacccttattataatgctgccataaaaaagtcacaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33027802 |
gcatgttgaatgcttctaagctccataatgatgcaaggttaacatgaactaacaacaaagcttagacccttattataatgctgccataaaaaagtcacaa |
33027703 |
T |
|
| Q |
310 |
aacaataacatgtaatttgaagaacattgacacttattgtaatcctacatcaaacacatcaaataaaactttgagcagatctaatttgaagcaacactaa |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33027702 |
aacaataacatgtaatttgaagaacattgacacttattgtaatcctaaatcaaacacatcaaataaaactttgagcagatctaatttgaagcaacactaa |
33027603 |
T |
|
| Q |
410 |
gttaacctaagacatctgtgtcaaccattgacccttattattgcagatacacaaacaatatacagaatcttaggttacttgatagtaaaagcacaatcaa |
509 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33027602 |
gttaacctaagacatctgggtcaaccattgacccttattattgctgatacacaaacaatatacagaatcttaggttacttgatagtaaaagcacaatcaa |
33027503 |
T |
|
| Q |
510 |
atcaagaggctcttatagatagattttctttatttgcttgtgtattctttgaatgataacaagaggctcttaataatcattaattaagagaggtttccga |
609 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33027502 |
atcaagaggctcttatagataaattttctttatttgcttgtgtattctttgaatgataacaagaggctcttaataatcattaattaagagaggtttccga |
33027403 |
T |
|
| Q |
610 |
gatccataatttaccttgttatcacatattctacatgtcgtaaccacaatcaaatgagaccataacatagaagaaggaaaataaaactctgcaatttaga |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33027402 |
gatccataatttaccttgttatcacatattcttcatgccgtaaccacaatcaaatgagaccataacatagaagaaggaaaataaaactctgcaatttaga |
33027303 |
T |
|
| Q |
710 |
gaaacatgacatgcatcttacattgcaaacaccgcagaaggcacgtttccatcaatgggaaatttaccagaaatccaatttacaaaagtcaacatatgag |
809 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33027302 |
gaaacgtgacatgcatcttacattgcaaacaccgcaaaaggcacgtttccatcaatgggaaatttaccagaaatccaatttacaaaagtcaacatatgag |
33027203 |
T |
|
| Q |
810 |
ctaaagcagacattataagtaactcaaattttagaaaatc-aatgacaaaccatctaatgcaatatataattgtgaactatttaaaatgtaatgcatgac |
908 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33027202 |
ctaaagcagacattataactaactcaaattttagaaaatcaaatgacaaaccatctaatgcaatatataattgtgaactatttaaaatgtaatgcacgac |
33027103 |
T |
|
| Q |
909 |
gagaaatcc-aaaactctaactaacataaaattgaaattaacaac-tttcacccttccatca |
968 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33027102 |
gagaaatccaaaaactctaactaacataaaattgaaattaacaacttttcacccttccatca |
33027041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 562 - 968
Target Start/End: Complemental strand, 33039030 - 33038613
Alignment:
| Q |
562 |
atgataacaagaggctcttaataatcattaattaagagaggtttccgagatccataatttaccttgtta-tcacatattctacatgtcgtaaccacaatc |
660 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| ||||||||| ||| |||||| |||||||||| |||||||||| ||||||||||||||| || |
|
|
| T |
33039030 |
atgacaacaagaggctcttaataatcatcaattaagcgaggtttccaagaaccataacttaccttgttggtcacatattccacatgtcgtaaccacgatg |
33038931 |
T |
|
| Q |
661 |
aaatgagaccataacatagaagaaggaaaataaaactctgcaatttagagaaacatgacatgcatcttacattgcaaacacc-----------gcagaag |
749 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||| |||||| |||| ||| ||| |
|
|
| T |
33038930 |
aaatgagaccataacatagaagaa----aataaaactctgcaattgatagaaacaagacatgcatcttatgttgcaagcaccattgcagcaccgcaaaag |
33038835 |
T |
|
| Q |
750 |
gcacgtttccatcaatgggaaa-tttaccagaaatccaatttacaaaagtcaacatatgagctaaagcagacattataagtaactcaaattttagaaaat |
848 |
Q |
| |
|
|||| ||||| || |||||| |||||||| |||| ||||| |||||||| | || || ||||| | ||| ||||||||||||||| |||||||||||| |
|
|
| T |
33038834 |
gcaccattccaacagcgggaaaatttaccagtaatctaattttcaaaagtctaaatgtgtgctaa-gaagatattataagtaactcagattttagaaaat |
33038736 |
T |
|
| Q |
849 |
caa-tgacaaaccatctaatgcaatatataattgtgaactatttaaaatgtaatgcatgacgagaaatcc-aaaactctaactaacataaaattgaaatt |
946 |
Q |
| |
|
||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33038735 |
caaatgacaaaccatctaatacaatatatgattgtgaactatttaaaatgtaatgcacaatgagaaatccaaaaactctaactaacataaaattgaaatt |
33038636 |
T |
|
| Q |
947 |
aacaac-tttcacccttccatca |
968 |
Q |
| |
|
|| ||| |||||||||||||||| |
|
|
| T |
33038635 |
aagaacttttcacccttccatca |
33038613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 567 - 713
Target Start/End: Complemental strand, 33021119 - 33020972
Alignment:
| Q |
567 |
aacaagaggctcttaataatcattaattaagagaggtttccgagatccataatttaccttgttatcacat-attctacatgtcgtaaccacaatcaaatg |
665 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||| ||||||||||||||| || ||||| |
|
|
| T |
33021119 |
aacaagaggctcttaataatcatcaattaagagaggtttccgagatccacaatttaccttgtcatcacattattccacatgtcgtaaccacgatgaaatg |
33021020 |
T |
|
| Q |
666 |
agaccataacatagaagaaggaaaataaaactctgcaatttagagaaa |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33021019 |
agaccataacatagaagaaggaaaataaaactctgcaatttagagaaa |
33020972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 817 - 968
Target Start/End: Complemental strand, 33020887 - 33020732
Alignment:
| Q |
817 |
agacattataagtaactcaaattttagaaaatcaa-tgacaaaccatctaatgcaatatataattgtgaactatttaaaatgtaatgcatgacgagaaat |
915 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
33020887 |
agacattataagtaactcagattttagaaaatcaaatgacaagccatctaatacaatatataattgtgaactatttaaaatataatgcacgacgagaaat |
33020788 |
T |
|
| Q |
916 |
cc-aaaactctaac-taacataaaattgaaattaacaac-tttcacccttccatca |
968 |
Q |
| |
|
|| |||||| |||| |||||||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
33020787 |
ccaaaaactttaacttaacataaaattgaaattaagaacttttcacccttctatca |
33020732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 458 - 579
Target Start/End: Complemental strand, 33039193 - 33039072
Alignment:
| Q |
458 |
acacaaacaatatacagaatcttaggttacttgatagtaaaagcacaatcaaatcaagaggctcttatagatagattttctttatttgcttgtgtattct |
557 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |||| |
|
|
| T |
33039193 |
acacaaacactatacaaaatcttaggttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttacttgtgttttct |
33039094 |
T |
|
| Q |
558 |
ttgaatgataacaagaggctct |
579 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
33039093 |
ttgaatgacaacaagaggctct |
33039072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 458 - 579
Target Start/End: Complemental strand, 33021287 - 33021166
Alignment:
| Q |
458 |
acacaaacaatatacagaatcttaggttacttgatagtaaaagcacaatcaaatcaagaggctcttatagatagattttctttatttgcttgtgtattct |
557 |
Q |
| |
|
|||| ||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
33021287 |
acacgaacaatatataaaatcttacgttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttatttgtgtattct |
33021188 |
T |
|
| Q |
558 |
ttgaatgataacaagaggctct |
579 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
33021187 |
ttgaatgacaacaagaggctct |
33021166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 263 - 410
Target Start/End: Complemental strand, 33039359 - 33039206
Alignment:
| Q |
263 |
aacaaagcttagacccttattataatgctgccataaaaaa-gtcacaaaac-----aataacatgtaatttgaagaacattgacacttattgtaatccta |
356 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||| ||||| ||| ||||| | | || | |||||||||||||||||| ||||||||| |
|
|
| T |
33039359 |
aacaaggcttagacccttattataacgctgccataaaaaaagtcaccaaagtgagaaataaaaagcaaatagaagaacattgacacttaaggtaatccta |
33039260 |
T |
|
| Q |
357 |
catcaaacacatcaaataaaactttgagcagatctaatttgaagcaacactaag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
33039259 |
aatcaaacacatcaaataaaactttgagcagatgtaactggaagcaacactaag |
33039206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 332 - 410
Target Start/End: Complemental strand, 33021378 - 33021300
Alignment:
| Q |
332 |
aacattgacacttattgtaatcctacatcaaacacatcaaataaaactttgagcagatctaatttgaagcaacactaag |
410 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33021378 |
aacattgacacttgttgtaatcctaaatcaaacatattaaataaaactttgagcagatgtaatttgaagcaacactaag |
33021300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 33021678 - 33021609
Alignment:
| Q |
10 |
atatatatgcagctgaaacaaactaactacgttgaaccattttcaaattatgactcaactatgttttgtt |
79 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33021678 |
atatatatgaagctgaaacaaactaactaagatgaatcattttcaaattatgactcaactatgttttgtt |
33021609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 33021455 - 33021414
Alignment:
| Q |
261 |
acaacaaagcttagacccttattataatgctgccataaaaaa |
302 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33021455 |
acaacgaagcttagacccttattataaggctgccataaaaaa |
33021414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 33021551 - 33021514
Alignment:
| Q |
125 |
tggcttgctctatgtaatctaatttatatttgtaacct |
162 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33021551 |
tggcttgctctgtgtaatctaatttatatttgtaacct |
33021514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 33021488 - 33021455
Alignment:
| Q |
201 |
ttggaacatgcatgttgaatgcttctaagctcca |
234 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
33021488 |
ttggaacgtgcatgttgaatgcttctaagctcca |
33021455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 834 - 902
Target Start/End: Original strand, 7318435 - 7318504
Alignment:
| Q |
834 |
caaattttagaaaatc-aatgacaaaccatctaatgcaatatataattgtgaactatttaaaatgtaatg |
902 |
Q |
| |
|
||||| |||||||||| ||||||||||||| |||| |||||| | ||||||||||||||||||| ||||| |
|
|
| T |
7318435 |
caaatcttagaaaatcgaatgacaaaccatataattcaatatttgattgtgaactatttaaaatataatg |
7318504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 829 - 904
Target Start/End: Original strand, 7323948 - 7324024
Alignment:
| Q |
829 |
taactcaaattttagaaaatc-aatgacaaaccatctaatgcaatatataattgtgaactatttaaaatgtaatgca |
904 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||| ||| |||| |||||| | ||| ||||||||||||||| ||||||| |
|
|
| T |
7323948 |
taacgcaaatcttagaaaatcgaatgacaaagcatttaatacaatatttgattttgaactatttaaaatataatgca |
7324024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 829 - 896
Target Start/End: Complemental strand, 34438 - 34370
Alignment:
| Q |
829 |
taactcaaattttagaaaatc-aatgacaaaccatctaatgcaatatataattgtgaactatttaaaat |
896 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
34438 |
taacgcaaatcttagaaaatccaatgacaaaccatttaatgcaattcatgattgtgaactatttaaaat |
34370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 670 - 742
Target Start/End: Complemental strand, 23645756 - 23645684
Alignment:
| Q |
670 |
cataacatagaagaaggaaaataaaactctgcaatttagagaaacatgacatgcatcttacattgcaaacacc |
742 |
Q |
| |
|
||||||| |||||||||||||||| |||| |||||| | ||||||| ||||||||||||| ||| ||| |||| |
|
|
| T |
23645756 |
cataacaaagaagaaggaaaataatactcagcaattaaaagaaacaggacatgcatcttatatttcaagcacc |
23645684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 670 - 742
Target Start/End: Original strand, 23812818 - 23812890
Alignment:
| Q |
670 |
cataacatagaagaaggaaaataaaactctgcaatttagagaaacatgacatgcatcttacattgcaaacacc |
742 |
Q |
| |
|
||||||| |||||||||||||||| |||| |||||| | ||||||| ||||||||||||| ||| ||| |||| |
|
|
| T |
23812818 |
cataacaaagaagaaggaaaataatactcagcaattaaaagaaacaggacatgcatcttatatttcaagcacc |
23812890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 920 - 950
Target Start/End: Complemental strand, 2610 - 2580
Alignment:
| Q |
920 |
aactctaactaacataaaattgaaattaaca |
950 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2610 |
aactctaactaacataaaattgaaattaaca |
2580 |
T |
|
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Target: scaffold0760 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 920 - 950
Target Start/End: Complemental strand, 5105 - 5075
Alignment:
| Q |
920 |
aactctaactaacataaaattgaaattaaca |
950 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5105 |
aactctaactaacataaaattgaaattaaca |
5075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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