View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5637-Insertion-4 (Length: 930)

Name: NF5637-Insertion-4
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5637-Insertion-4
NF5637-Insertion-4
[»] chr4 (1 HSPs)
chr4 (265-923)||(34710802-34711460)


Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 265 - 923
Target Start/End: Original strand, 34710802 - 34711460
Alignment:
Q  265 tgaacatacacacgcaacaatagttacacgtaaaagtatgcttagaaattcatatagggatcnnnnnnnnnnnnnnnnn-ttcatatggaagagttatac 363  Q
    ||||||| |||||| || |||||||||||||||||||||||||| |||||||||||||||||                  ||||||||||||||||||||    
T  34710802 tgaacatgcacacgaaaaaatagttacacgtaaaagtatgcttataaattcatatagggatcaaaaaaataaattaaaaattcatatggaagagttatac 34710901  T
Q  364 taccgtattcatcaagtaaagcttcagattcgtcatgtcgctcgtgtgtggcatcatcctctctttctgagtgattttcaaaatcttgctggacattaac 463  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34710902 taccgtattcatcaagtaaagcttcagattcatcatgtccctcgtgtgtggcatcatcctctctttctgagtgattttcaaaatcttgctggacattaac 34711001  T
Q  464 ttgacttggagcttggtttaaatcaatgttaaaatcacctcttgggagtagagtctcttcaacatatggctgagcatcatcattatttggagattggttc 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34711002 ttgacttggagcttggtttaaatcaatgttaaaatcacctcttgggagtagagtctcttcaacatatggctgagcatcatcattatttggagattggttc 34711101  T
Q  564 aagtcaaagttaagaggaggtttcatggcttcctcaag-ctcaagagaacgatgcatttctgttctatatcctttttatactcnnnnnnncgcatggcgc 662  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||        ||||||||||    
T  34711102 aagtcaaagttaagaggaggtttcatggcttcctcaagactcaagagtacgatgcatttctgttctatatcctttttatactttttttttcgcatggcgc 34711201  T
Q  663 caagcattagaaggaaatcaattttagaaactttttaaattttaagagttatcaaacaagttgaaggctgaaaatattttcactgtgagaatgtgaaacg 762  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34711202 caagcattagagggaaatcaattttagaaactttttaaattttaagagttatcaaacaagttgaaggctgaaaatattttcactgtgagaatatgaaacg 34711301  T
Q  763 aaatccaccgaacagttgtaaagctatggaagtggaacggcatggtagtacctagaaaaaactataaatttatgcacttagtagtacataattaaaggag 862  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34711302 aaatccaccgaacagttgtaaagctagggaagtggaacggcatggtagtacctagaaaaaactataaatttatgcacttagtagtacataattaaaggag 34711401  T
Q  863 agaggaatgatgatgattcccaac-atacaaggggcaaaatcggracaatagtgtaaataaa 923  Q
    ||||||   ||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  34711402 agagga---atgatgattcccaacaatacaaggggcaaaatcggaacaatagtgtaaataaa 34711460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University