View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5637-Insertion-6 (Length: 730)

Name: NF5637-Insertion-6
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5637-Insertion-6
NF5637-Insertion-6
[»] chr4 (42 HSPs)
chr4 (76-254)||(55979775-55979953)
chr4 (623-730)||(51389502-51389609)
chr4 (350-425)||(1580165-1580239)
chr4 (355-410)||(22257084-22257139)
chr4 (354-425)||(31240763-31240833)
chr4 (353-425)||(36792447-36792518)
chr4 (359-425)||(41952943-41953008)
chr4 (556-618)||(51389164-51389226)
chr4 (355-408)||(48099940-48099993)
chr4 (353-413)||(51039003-51039063)
chr4 (356-425)||(6953276-6953344)
chr4 (357-425)||(9567580-9567646)
chr4 (349-424)||(43168598-43168671)
chr4 (354-425)||(48372112-48372182)
chr4 (356-406)||(41951668-41951718)
chr4 (351-425)||(42915103-42915175)
chr4 (352-425)||(39241187-39241259)
chr4 (355-428)||(51389428-51389499)
chr4 (352-408)||(48326669-48326725)
chr4 (355-413)||(52392114-52392170)
chr4 (355-425)||(31275261-31275329)
chr4 (351-425)||(47998709-47998780)
chr4 (356-413)||(5234360-5234416)
chr4 (352-429)||(36408089-36408164)
chr4 (352-429)||(36413212-36413287)
chr4 (349-405)||(11063971-11064026)
chr4 (356-408)||(54036419-54036471)
chr4 (354-413)||(1033274-1033332)
chr4 (356-413)||(15596522-15596578)
chr4 (355-408)||(30973713-30973766)
chr4 (356-401)||(42169391-42169436)
chr4 (358-407)||(47134729-47134778)
chr4 (353-413)||(31658045-31658104)
chr4 (360-408)||(51318831-51318879)
chr4 (354-425)||(46173652-46173721)
chr4 (356-394)||(3286962-3287000)
chr4 (360-425)||(940161-940226)
chr4 (493-530)||(14593827-14593864)
chr4 (356-425)||(16004216-16004282)
chr4 (473-530)||(17683358-17683415)
chr4 (356-393)||(30042278-30042315)
chr4 (472-529)||(54036532-54036589)
[»] chr1 (30 HSPs)
chr1 (352-410)||(48872836-48872894)
chr1 (354-413)||(15061971-15062030)
chr1 (356-425)||(4638040-4638107)
chr1 (355-408)||(5304718-5304771)
chr1 (360-425)||(7503580-7503644)
chr1 (356-425)||(31480023-31480091)
chr1 (360-425)||(45272050-45272116)
chr1 (355-408)||(49425866-49425919)
chr1 (556-618)||(49275785-49275847)
chr1 (353-410)||(49453606-49453662)
chr1 (355-408)||(52020312-52020365)
chr1 (465-531)||(5309047-5309113)
chr1 (355-401)||(8391227-8391273)
chr1 (364-410)||(30439376-30439422)
chr1 (355-425)||(31703368-31703436)
chr1 (362-407)||(5367936-5367981)
chr1 (357-416)||(51703002-51703060)
chr1 (355-413)||(30631733-30631790)
chr1 (355-413)||(51571552-51571609)
chr1 (355-408)||(9608811-9608864)
chr1 (352-425)||(22389411-22389481)
chr1 (356-413)||(31290097-31290153)
chr1 (560-617)||(49276578-49276635)
chr1 (354-394)||(28716287-28716327)
chr1 (355-425)||(39010929-39010997)
chr1 (362-407)||(3159382-3159426)
chr1 (472-529)||(27687522-27687579)
chr1 (362-407)||(30735314-30735358)
chr1 (356-425)||(33676015-33676083)
chr1 (356-425)||(40610344-40610411)
[»] chr8 (31 HSPs)
chr8 (355-425)||(45101511-45101579)
chr8 (354-425)||(30925541-30925610)
chr8 (354-425)||(42543367-42543437)
chr8 (351-404)||(34474085-34474138)
chr8 (353-404)||(32175090-32175141)
chr8 (356-425)||(37101574-37101642)
chr8 (355-425)||(21273598-21273666)
chr8 (362-425)||(38576524-38576586)
chr8 (352-408)||(42768006-42768062)
chr8 (350-401)||(28570291-28570342)
chr8 (350-401)||(28577884-28577935)
chr8 (355-425)||(14029130-14029199)
chr8 (354-428)||(40413250-40413322)
chr8 (360-425)||(9963801-9963864)
chr8 (355-404)||(11879377-11879426)
chr8 (355-404)||(11896793-11896842)
chr8 (356-425)||(21648819-21648887)
chr8 (353-425)||(23258147-23258217)
chr8 (355-410)||(24946128-24946182)
chr8 (357-410)||(20473907-20473960)
chr8 (355-404)||(39719129-39719178)
chr8 (362-405)||(13971131-13971173)
chr8 (355-425)||(1179491-1179559)
chr8 (356-421)||(9046960-9047022)
chr8 (355-389)||(40842073-40842107)
chr8 (348-405)||(154424-154480)
chr8 (356-401)||(3650251-3650296)
chr8 (356-425)||(7678847-7678914)
chr8 (492-529)||(11223893-11223930)
chr8 (478-531)||(22706249-22706302)
chr8 (353-425)||(44103880-44103951)
[»] chr2 (22 HSPs)
chr2 (355-425)||(19913899-19913968)
chr2 (356-425)||(34138925-34138993)
chr2 (354-425)||(26321584-26321653)
chr2 (360-408)||(7428558-7428606)
chr2 (353-425)||(36133089-36133159)
chr2 (362-425)||(45515494-45515555)
chr2 (355-425)||(33295975-33296043)
chr2 (359-425)||(12600163-12600227)
chr2 (353-425)||(3091856-3091926)
chr2 (353-425)||(13711176-13711246)
chr2 (357-408)||(9202406-9202457)
chr2 (355-425)||(11164264-11164332)
chr2 (356-425)||(12066024-12066095)
chr2 (356-413)||(11229210-11229266)
chr2 (360-413)||(15019036-15019089)
chr2 (348-401)||(16577604-16577657)
chr2 (356-395)||(5455342-5455381)
chr2 (362-405)||(9760023-9760066)
chr2 (560-618)||(41405917-41405975)
chr2 (356-394)||(42283139-42283177)
chr2 (356-405)||(36909732-36909780)
chr2 (356-429)||(45693356-45693428)
[»] chr3 (31 HSPs)
chr3 (360-425)||(31249214-31249278)
chr3 (355-408)||(43169642-43169695)
chr3 (353-425)||(51650469-51650542)
chr3 (353-408)||(108560-108615)
chr3 (355-425)||(6126569-6126638)
chr3 (354-408)||(51464153-51464207)
chr3 (356-408)||(5399046-5399098)
chr3 (356-404)||(46003841-46003889)
chr3 (354-408)||(51406257-51406311)
chr3 (352-425)||(44365176-44365248)
chr3 (352-425)||(55344180-55344252)
chr3 (353-429)||(31997913-31997988)
chr3 (354-425)||(32687846-32687916)
chr3 (355-425)||(7231894-7231962)
chr3 (362-404)||(41309134-41309176)
chr3 (352-425)||(11173565-11173636)
chr3 (356-425)||(29706018-29706085)
chr3 (355-404)||(36318168-36318217)
chr3 (354-413)||(20380776-20380834)
chr3 (359-394)||(44695156-44695191)
chr3 (354-425)||(46473243-46473312)
chr3 (354-408)||(25828804-25828857)
chr3 (356-425)||(28300535-28300602)
chr3 (355-396)||(51673005-51673046)
chr3 (356-404)||(20893131-20893179)
chr3 (355-424)||(46953062-46953132)
chr3 (355-394)||(7293987-7294026)
chr3 (560-618)||(40024975-40025033)
chr3 (347-405)||(51973390-51973447)
chr3 (493-530)||(2482709-2482746)
chr3 (356-425)||(3483234-3483301)
[»] chr7 (28 HSPs)
chr7 (352-408)||(32154435-32154491)
chr7 (360-425)||(19426695-19426758)
chr7 (353-404)||(7807189-7807240)
chr7 (356-425)||(12141999-12142066)
chr7 (355-408)||(27778192-27778245)
chr7 (356-413)||(40717127-40717184)
chr7 (359-408)||(47424877-47424926)
chr7 (351-428)||(8792484-8792556)
chr7 (356-404)||(40842541-40842589)
chr7 (348-404)||(43260125-43260181)
chr7 (355-425)||(22330519-22330587)
chr7 (361-425)||(28596992-28597057)
chr7 (354-393)||(43657147-43657186)
chr7 (362-404)||(7390669-7390711)
chr7 (357-408)||(36990170-36990221)
chr7 (356-413)||(10591278-10591334)
chr7 (356-413)||(25887709-25887765)
chr7 (354-394)||(155868-155908)
chr7 (352-428)||(48866815-48866889)
chr7 (354-393)||(34348914-34348953)
chr7 (350-425)||(46651787-46651860)
chr7 (356-394)||(21858891-21858929)
chr7 (348-394)||(25192917-25192963)
chr7 (493-531)||(42663082-42663120)
chr7 (356-425)||(5978694-5978761)
chr7 (368-425)||(12102610-12102665)
chr7 (354-391)||(29355479-29355516)
chr7 (353-394)||(43445551-43445592)
[»] chr5 (34 HSPs)
chr5 (356-411)||(40223674-40223729)
chr5 (356-425)||(3141611-3141678)
chr5 (357-410)||(3634622-3634675)
chr5 (354-407)||(6515326-6515379)
chr5 (356-425)||(10232614-10232682)
chr5 (356-425)||(12661835-12661903)
chr5 (353-425)||(13613849-13613920)
chr5 (354-425)||(5130264-5130334)
chr5 (560-618)||(42831259-42831317)
chr5 (356-413)||(16202846-16202903)
chr5 (353-425)||(21749473-21749544)
chr5 (351-413)||(2117524-2117585)
chr5 (350-404)||(9403648-9403701)
chr5 (360-425)||(14206504-14206568)
chr5 (356-425)||(39595389-39595456)
chr5 (357-425)||(125207-125273)
chr5 (353-425)||(33567125-33567195)
chr5 (353-408)||(4434601-4434656)
chr5 (354-413)||(11767877-11767935)
chr5 (351-394)||(19127268-19127311)
chr5 (355-425)||(11306811-11306879)
chr5 (360-394)||(31284287-31284321)
chr5 (352-425)||(33243626-33243697)
chr5 (354-425)||(20719902-20719971)
chr5 (353-391)||(18449391-18449429)
chr5 (355-425)||(27392590-27392658)
chr5 (352-381)||(8897539-8897568)
chr5 (357-394)||(12349929-12349966)
chr5 (360-393)||(12910919-12910952)
chr5 (356-425)||(24431507-24431574)
chr5 (492-529)||(26660445-26660482)
chr5 (492-529)||(26932037-26932074)
chr5 (353-410)||(42532246-42532302)
chr5 (356-393)||(42699194-42699231)
[»] chr6 (15 HSPs)
chr6 (354-425)||(28548907-28548977)
chr6 (352-425)||(9954663-9954735)
chr6 (355-410)||(25166753-25166808)
chr6 (351-407)||(2241710-2241765)
chr6 (354-408)||(10521253-10521307)
chr6 (353-425)||(32253895-32253966)
chr6 (357-413)||(24752357-24752412)
chr6 (350-381)||(25554390-25554421)
chr6 (355-394)||(26378273-26378312)
chr6 (350-393)||(34021055-34021098)
chr6 (354-408)||(24437574-24437628)
chr6 (352-393)||(10628425-10628466)
chr6 (348-405)||(25811861-25811917)
chr6 (356-413)||(30733135-30733191)
chr6 (356-413)||(32853033-32853089)
[»] scaffold0060 (1 HSPs)
scaffold0060 (356-410)||(6945-6999)
[»] scaffold0018 (1 HSPs)
scaffold0018 (354-425)||(36114-36186)
[»] scaffold0001 (1 HSPs)
scaffold0001 (354-408)||(395992-396046)
[»] scaffold0204 (1 HSPs)
scaffold0204 (353-401)||(27477-27525)
[»] scaffold0036 (1 HSPs)
scaffold0036 (354-425)||(18119-18187)
[»] scaffold0508 (1 HSPs)
scaffold0508 (350-394)||(11419-11463)
[»] scaffold0115 (1 HSPs)
scaffold0115 (354-404)||(15076-15125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (348-386)||(119985-120023)
[»] scaffold0005 (1 HSPs)
scaffold0005 (493-530)||(223514-223551)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 5e-58; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 55979775 - 55979953
Alignment:
Q  76 aagagagaacttatcttagcctttttatccaggaaatccaatgtttccagtcaggttttgacaagtgtacctttagatttacccctagaagtggtaacat 175  Q
    |||||| |||||||||||| |||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||||||||| |     
T  55979775 aagagaaaacttatcttagtctttttatccaggaaatccaatgtctcaagtcagattttgacaagtgtacttttagatttacccctagaagtggtaataa 55979874  T
Q  176 agctgctgatagtttgacccattaagcacatacagaccctgatatggtctggattgaggaggtgccaccaacaatttat 254  Q
     ||||||||||||||| |||| | ||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  55979875 ggctgctgatagtttggcccaattagcccatacagaccctgatatggtctggatagaggaggtgccaccagcaagttat 55979953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 623 - 730
Target Start/End: Original strand, 51389502 - 51389609
Alignment:
Q  623 gtgaaaatagcagaaaatagaagaaggatcgagaagtttctttctttccgcaaaagcccacaccgatatacctttcgtaacggccaaggcgtgaatcact 722  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51389502 gtgaaaatagcagaaaacagaagaaggatcgagaagtttcttgctttccgcaaaagcccacaccgatatacctttcgtaacggccaaggcgtgaatcact 51389601  T
Q  723 atttcatc 730  Q
    ||||||||    
T  51389602 atttcatc 51389609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 350 - 425
Target Start/End: Original strand, 1580165 - 1580239
Alignment:
Q  350 aaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||    
T  1580165 aaaaatgagtagtgatatttgaacaaccatttcatacaactttttgtgacaactttttttttc-tctcttttcatt 1580239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 355 - 410
Target Start/End: Original strand, 22257084 - 22257139
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22257084 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 22257139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 354 - 425
Target Start/End: Complemental strand, 31240833 - 31240763
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  31240833 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttcttttttc-tctcttttcatt 31240763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 36792518 - 36792447
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  || ||||||||||||    
T  36792518 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttcttttctc-tctcttttcatt 36792447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 359 - 425
Target Start/End: Complemental strand, 41953008 - 41952943
Alignment:
Q  359 tagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  41953008 tagtgatatttgaacaaccatttcatataacttttggtgacaactttttttttc-tctcttttcatt 41952943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 556 - 618
Target Start/End: Original strand, 51389164 - 51389226
Alignment:
Q  556 gaaagtaccccataacttggagttgtctcgtaccaggaaaatctaaaaagtatggtatttttg 618  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  51389164 gaaaataccccataactttgagttgtctcgtaccagaaaaatctaaaaagtatggtatttttg 51389226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 48099993 - 48099940
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48099993 agagtagtgatatttaaacaaccatttcatacaacttttggtgacaactttttt 48099940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 51039003 - 51039063
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||    
T  51039003 aaagagtagtgatatttaaacaaccatttcatacaacttttggtgacaattttttttttct 51039063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 6953276 - 6953344
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||  || ||||||||||||    
T  6953276 gagtagtgatatttgaacaaccatttcttacaacttttggtgacaacttcttttctc-tctcttttcatt 6953344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 357 - 425
Target Start/End: Original strand, 9567580 - 9567646
Alignment:
Q  357 agtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||  || |||||||||||||    
T  9567580 agtagtgatatttgaacaaccattttatacaatttttggtgacaacttttt--tttttctcttttcatt 9567646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 43168598 - 43168671
Alignment:
Q  349 taaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcat 424  Q
    |||| ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||  || ||||||||||||    
T  43168598 taaagaagagtagtaatatttgaacaaccatttcatacagtttttggtgacaacttttt--tttttctcttttcat 43168671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 48372112 - 48372182
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||| ||| ||||||||||||    
T  48372112 aagagtagtgatatttgaacaactatttcatacaatttttagtgacaacttcttttttc-tctcttttcatt 48372182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 41951718 - 41951668
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttt 406  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  41951718 gagtagtgatatttgaacaaccatttcatataatttttggtgacaactttt 41951668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 42915103 - 42915175
Alignment:
Q  351 aaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||| ||| ||||||||||||    
T  42915103 aaaaagagtagtgatatttgaacaactatttgatacaactttt-gtgacaacttcttttttc-tctcttttcatt 42915175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 352 - 425
Target Start/End: Original strand, 39241187 - 39241259
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||  || ||||||||||||    
T  39241187 aaaagagtagtgatattttaacaaccatttgagacaacttttggtgacaacttattttctc-tctcttttcatt 39241259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 428
Target Start/End: Complemental strand, 51389499 - 51389428
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcattagt 428  Q
    |||| |||||||||||||||||||||| ||||||||||| |||||||||| ||| ||| |||||||||||||||    
T  51389499 agagcagtgatatttgaacaaccatttgatacaactttt-gtgacaacttcttttttc-tctcttttcattagt 51389428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 48326725 - 48326669
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||    
T  48326725 aaaagagtagtgatatttgatcaaccatttcatataatttttagtgacaactttttt 48326669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 52392114 - 52392170
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||| ||| ||||    
T  52392114 agagtagtgatatt--aacaaccatttcatacaacttttggtgacaacttcttttttct 52392170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 31275329 - 31275261
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||| || ||| ||| ||||||||||||    
T  31275329 agagtagtgatatttgaacaaccatttgatacaactttt-gtgacaatttcttttttc-tctcttttcatt 31275261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 47998780 - 47998709
Alignment:
Q  351 aaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||| ||||| ||||||||||    
T  47998780 aaaaagagtagtgatatttgaacaatcatttgatacaactttt-gtgataactttttt-ttctt-tcttttcatt 47998709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 5234360 - 5234416
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||    
T  5234360 gagtagtgatatttgaacaaccatttgatacaactttt-gtgacaattttttttttct 5234416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 36408089 - 36408164
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcattagtt 429  Q
    |||||||| |||||||||||||||| |||| ||||||||||| ||||||| ||| || || |||||||||||||||||    
T  36408089 aaaagagtggtgatatttgaacaactatttgatacaactttt-gtgacaa-tttcttttttttctcttttcattagtt 36408164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 36413212 - 36413287
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcattagtt 429  Q
    |||||||| |||||||||||||||| |||| ||||||||||| ||||||| ||| || || |||||||||||||||||    
T  36413212 aaaagagtggtgatatttgaacaactatttgatacaactttt-gtgacaa-tttcttttttttctcttttcattagtt 36413287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 11063971 - 11064026
Alignment:
Q  349 taaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttt 405  Q
    |||| |||||||||||||||||||||||||||| | ||||| |||||||||||||||    
T  11063971 taaataagagtagtgatatttgaacaaccatttaagacaac-tttggtgacaacttt 11064026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 54036419 - 54036471
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||| |||||||||||||||||||||  ||||| |||||||||||||||||||    
T  54036419 gagtggtgatatttgaacaaccattttgtacaatttttggtgacaactttttt 54036471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 1033332 - 1033274
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||| ||| ||||    
T  1033332 aagagtagtgatatttgaacaaccattttaaacaactttt-gtgacaacttcttttttct 1033274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 15596578 - 15596522
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||| ||| ||||    
T  15596578 gagtagtgatatttgaacaaccattttaaacaactttt-gtgacaacttcttttttct 15596522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 30973766 - 30973713
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||||||||||||||||||| ||||||||||| |||| |||| || ||||||    
T  30973766 agagtagtgatatttgaacaactatttcatacaattttttgtgataattttttt 30973713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 42169391 - 42169436
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaa 401  Q
    |||||||||| ||||||||||||||| ||| |||||||||||||||    
T  42169391 gagtagtgatgtttgaacaaccatttaatataacttttggtgacaa 42169436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 47134729 - 47134778
Alignment:
Q  358 gtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttt 407  Q
    ||||||||||||||||||| |||||||| || |||| |||||||||||||    
T  47134729 gtagtgatatttgaacaactatttcatataatttttcgtgacaacttttt 47134778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 31658104 - 31658045
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| |||||||||| ||| ||||    
T  31658104 aaagagtagcgatatttgaacaaccatttgatacagctttt-gtgacaacttcttttttct 31658045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 51318879 - 51318831
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  51318879 agtgatatttaaacaaccatttcatataatttttggtgacaattttttt 51318831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 425
Target Start/End: Complemental strand, 46173721 - 46173652
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||| || || |||||||||||||    
T  46173721 aagagtaatgatatttgaataaccatttgatacaactttt-gtgacaa-tttcttttttttctcttttcatt 46173652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 3287000 - 3286962
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  3287000 gagtggtgatatttgaacaaccatttcacacaacttttg 3286962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 940161 - 940226
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||| ||| || |||| ||||  | |||||| ||||| ||||||||||    
T  940161 agtgatatttgaacaaccattttatataattttttgtgattaatttttttttcttttcttttcatt 940226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 530
Target Start/End: Complemental strand, 14593864 - 14593827
Alignment:
Q  493 aagttgtcacaaaatggatacacaaatatcatttctca 530  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  14593864 aagttgtcacaaaatggatattcaaatatcatttctca 14593827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 16004216 - 16004282
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||| |||||| | |||||| || |||||||||||||| ||| ||||||||||||    
T  16004216 gagtagtgatatttgaacatccatttgagacaactctt-gtgacaactttttt-ttc-tctcttttcatt 16004282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 530
Target Start/End: Complemental strand, 17683415 - 17683358
Alignment:
Q  473 taatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctca 530  Q
    ||||||||| |||| |||| ||||||||| |||||||||   ||||||||||||||||    
T  17683415 taatatgagtatgagagataaagttgtcataaaatggatgttcaaatatcatttctca 17683358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 30042315 - 30042278
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaactttt 393  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  30042315 gagtaatgatatttgaacaactatttcatacaactttt 30042278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 54036532 - 54036589
Alignment:
Q  472 ataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctc 529  Q
    ||||| |||| |||| |||| ||||||||||||||||| |  ||||||||||||||||    
T  54036532 ataatttgagtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctc 54036589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 48872836 - 48872894
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48872836 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 48872894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 15062030 - 15061971
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  15062030 aagagtagtgatatttgaacaaccatttcatataacttttggtgacaactttttttttct 15061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 4638107 - 4638040
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||| || |||||||||||||    
T  4638107 gagtagtgatatttgaacaaccatttcatacaacttttggtgaca--ttttttttttttctcttttcatt 4638040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 5304718 - 5304771
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5304718 agagtagtgatatttgaacaaccatttcatacaatttttggtgacaactttttt 5304771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 7503644 - 7503580
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  7503644 agtgatatttgaacaaccatttcatacaacttttggtgacaattttttttttc-tctcttttcatt 7503580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 31480023 - 31480091
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  31480023 gagtagtgatatttgaacaactatttcatacaatttttggtgacaactttttttttc-tctcttttcatt 31480091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 45272050 - 45272116
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct-tctcttttcatt 425  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||||||||||    
T  45272050 agtgatatttgaacaaccatttcatacaacttttggtgataactttttttttttctctcttttcatt 45272116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 49425919 - 49425866
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  49425919 agagtagtgatatttgaacaaccatttcatacaacttttggtgataattttttt 49425866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 556 - 618
Target Start/End: Complemental strand, 49275847 - 49275785
Alignment:
Q  556 gaaagtaccccataacttggagttgtctcgtaccaggaaaatctaaaaagtatggtatttttg 618  Q
    |||||||||||| ||||||||||||| | || |||| ||||||||||||||||||||||||||    
T  49275847 gaaagtaccccacaacttggagttgtgtggtgccagaaaaatctaaaaagtatggtatttttg 49275785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 49453662 - 49453606
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 410  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  49453662 aaagagtagtgatatttgaacaactatttgatacaactttt-gtgacaacttttttct 49453606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 52020312 - 52020365
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  52020312 agagcagtgatatttgaacaaccatttcatacaacttttagcgacaactttttt 52020365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 531
Target Start/End: Original strand, 5309047 - 5309113
Alignment:
Q  465 taagatgataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctcat 531  Q
    |||||||||||||||||  ||||||| |||||||||||||| ||| |  ||||||||||||||||||    
T  5309047 taagatgataatatgagtctgatagaggaagttgtcacaaagtggttgtacaaatatcatttctcat 5309113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 8391227 - 8391273
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaa 401  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  8391227 agagtagtgatatctgaacaaccatttcatacaatttttggtgacaa 8391273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 30439422 - 30439376
Alignment:
Q  364 atatttgaacaaccatttcatacaacttttggtgacaacttttttct 410  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||    
T  30439422 atatttgaacaaccaattgatacaacttttggtgacaacttttttct 30439376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 31703368 - 31703436
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||| |||||||| ||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||    
T  31703368 agaggagtgatatatgaacaaccattttatacaatttttggtgacaactttttt-ttc-tctcttttcatt 31703436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 5367936 - 5367981
Alignment:
Q  362 tgatatttgaacaaccatttcatacaacttttggtgacaacttttt 407  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  5367936 tgatatttgaacatccatttcatacaatttttggtgacaacttttt 5367981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 51703002 - 51703060
Alignment:
Q  357 agtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttct 416  Q
    ||||||||||||||||||||||||||| ||||||||| |||| || |||||| |||||||    
T  51703002 agtagtgatatttgaacaaccatttcagacaactttt-gtgataattttttttttcttct 51703060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 30631733 - 30631790
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    ||||||||||||||||||||||||||| | |||||||||||| ||||||| ||| ||||    
T  30631733 agagtagtgatatttgaacaaccattttagacaacttttggt-acaacttcttttttct 30631790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 51571609 - 51571552
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||    
T  51571609 agagttgtgatatttgaacaaccatttaatacaactttt-gtgacaacttcttttttct 51571552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 9608864 - 9608811
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||||||||||||||| || |||||||||||| |||| ||| ||||||||||    
T  9608864 agagtagtgatatttgaataatcatttcatacaattttttgtgtcaactttttt 9608811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 425
Target Start/End: Original strand, 22389411 - 22389481
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||| |||||||||||||||||||| || |||||||| |||||||||| ||| ||| ||||||||||||    
T  22389411 aaaagagtaatgatatttgaacaaccatttgat-caactttt-gtgacaacttcttttttc-tctcttttcatt 22389481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 31290097 - 31290153
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||    
T  31290097 gagtggtgatatttgaacaaccatttcacacaactttt-gtgacaacttattttttct 31290153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 617
Target Start/End: Original strand, 49276578 - 49276635
Alignment:
Q  560 gtaccccataacttggagttgtctcgtaccaggaaaatctaaaaagtatggtattttt 617  Q
    |||||||| ||||||||||||| | |||| || ||||||||||||||| |||||||||    
T  49276578 gtaccccacaacttggagttgtgtggtacaagaaaaatctaaaaagtagggtattttt 49276635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 28716327 - 28716287
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  28716327 aagagtagtgatatttgaacaaccatttgagacaacttttg 28716287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 39010997 - 39010929
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||| ||||||||||||||| | | ||||||||| |||||||||| ||| ||| ||||||||||||    
T  39010997 agagtagtgttatttgaacaaccatatgagacaactttt-gtgacaacttattttttc-tctcttttcatt 39010929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 3159382 - 3159426
Alignment:
Q  362 tgatatttgaacaaccatttcatacaacttttggtgacaacttttt 407  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||    
T  3159382 tgatatttgaacaaccattttttacaactttt-gtgacaacttttt 3159426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 27687522 - 27687579
Alignment:
Q  472 ataatatgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctc 529  Q
    ||||| |||| |||| |||| ||||||||||||||||| |  ||||||||||||||||    
T  27687522 ataatgtgagtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctc 27687579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 30735358 - 30735314
Alignment:
Q  362 tgatatttgaacaaccatttcatacaacttttggtgacaacttttt 407  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||    
T  30735358 tgatatttgaacaaccattttttacaactttt-gtgacaacttttt 30735314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 33676083 - 33676015
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||| ||||||||||||||| |||| ||| ||||||| |||||||||||||| || || | ||||||||    
T  33676083 gagtattgatatttgaacaactatttaataaaactttt-gtgacaactttttttttttttttttttcatt 33676015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 40610411 - 40610344
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||| |||||| | ||||||||| |||||||||| |||  || ||||||||||||    
T  40610411 gagtagtgatatttgaacatccatttgagacaactttt-gtgacaacttcttttctc-tctcttttcatt 40610344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 45101579 - 45101511
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  45101579 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt-ttc-tctcttttcatt 45101511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 30925541 - 30925610
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  30925541 aagagtagtgatatttgaacaaccattttatacaacttttggtgacaactttttt-ttc-tctcttttcatt 30925610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 42543367 - 42543437
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  42543367 aagagtagtgataattgaacaaccatttcatacaacttttggtgacaacttcttttttc-tctcttttcatt 42543437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 34474138 - 34474085
Alignment:
Q  351 aaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34474138 aaaaagagtaatgatatttgaacaaccatttcatacaacttttggtgacaactt 34474085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 32175141 - 32175090
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32175141 aaagagtaatgatatttgaacaaccatttcatacaacttttggtgacaactt 32175090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 37101574 - 37101642
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||| ||||||||||||    
T  37101574 gagtagtgatatttgaacaaccatttcatacaatttttcgtgacaacttcttttttc-tctcttttcatt 37101642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 21273598 - 21273666
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||    
T  21273598 agagtagtgatatttgaacaactatttcatacaactttt-gtgacaacttttcttttc-tctcttttcatt 21273666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 38576586 - 38576524
Alignment:
Q  362 tgatatttgaacaaccatttcatacaacttttggtgacaactt-ttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||  |||||||||||||    
T  38576586 tgatatttgaacaaccatttcaaacaacttttggtgacaacttattttct--ttctcttttcatt 38576524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 42768006 - 42768062
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||    
T  42768006 aaaagagtagtgatatttgaacaaacatttcatacaatttttagtgacaattttttt 42768062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 350 - 401
Target Start/End: Original strand, 28570291 - 28570342
Alignment:
Q  350 aaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaa 401  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||    
T  28570291 aaaaaaaaatagtggtatttgaacaaccatttcatacaacttttggtgacaa 28570342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 350 - 401
Target Start/End: Original strand, 28577884 - 28577935
Alignment:
Q  350 aaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaa 401  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||    
T  28577884 aaaaaaaaatagtggtatttgaacaaccatttcatacaacttttggtgacaa 28577935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 14029130 - 14029199
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||||||| |||  || ||||||||||||    
T  14029130 agagtagtgatattttaacaaccatttgagacaacttttggtgacaacttattttctc-tctcttttcatt 14029199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 428
Target Start/End: Original strand, 40413250 - 40413322
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcattagt 428  Q
    |||||||||||||||||||||||||||| |||||||||||  ||| ||||| ||| ||| |||||||||||||||    
T  40413250 aagagtagtgatatttgaacaaccatttgatacaactttt-atgataacttcttttttc-tctcttttcattagt 40413322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 9963864 - 9963801
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||||| ||| ||||||||||||    
T  9963864 agtgatatttgaacaaccattttatacaacttttgatgataactttttt-ttc-tctcttttcatt 9963801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 11879377 - 11879426
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  11879377 agagtagtgatatttgaaaaaccatttcatacaatttttggtaacaactt 11879426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 11896793 - 11896842
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  11896793 agagtagtgatatttgaaaaaccatttcatacaatttttggtaacaactt 11896842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 21648819 - 21648887
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||| ||||||||||| | |||||||||||||||||||| |||  || ||||||||||||    
T  21648819 gagtagtgatattttaacaaccatttgagacaacttttggtgacaacttattttctc-tctcttttcatt 21648887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 23258217 - 23258147
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||||| | |||| |||| |||||||||| ||| ||| ||||||||||||    
T  23258217 aaagagtagtgatatttgaacaaccatttgaaacaa-tttttgtgacaacttcttttttc-tctcttttcatt 23258147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 24946182 - 24946128
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 410  Q
    |||| |||||||||||||||||||||| | |||||||||||| |||||||||||||    
T  24946182 agagcagtgatatttgaacaaccattttagacaacttttggt-acaacttttttct 24946128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 20473960 - 20473907
Alignment:
Q  357 agtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 410  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||| | ||||||    
T  20473960 agtagtgatatttgaacaactatttcatataacttttagtgacaattattttct 20473907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 39719129 - 39719178
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    ||||||||||||||| ||||||||||| | |||| |||||||||||||||    
T  39719129 agagtagtgatattttaacaaccatttgagacaatttttggtgacaactt 39719178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 13971131 - 13971173
Alignment:
Q  362 tgatatttgaacaaccatttcatacaacttttggtgacaacttt 405  Q
    ||||||||||||| |||||||||||||||||| |||||||||||    
T  13971131 tgatatttgaacatccatttcatacaactttt-gtgacaacttt 13971173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 1179559 - 1179491
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||| |||||| |||| ||| ||||||| |||||||||||||| || |||| ||||||||    
T  1179559 agagtagtgatatttaaacaactatttgatataactttt-gtgacaactttttt-tttttcttttttcatt 1179491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 9046960 - 9047022
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctctttt 421  Q
    ||||||||||||||||||||| |||| |||||| |||| ||||||  |||||| ||||||||||||    
T  9046960 gagtagtgatatttgaacaactatttgatacaa-tttttgtgaca--tttttttttcttctctttt 9047022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 389
Target Start/End: Complemental strand, 40842107 - 40842073
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaac 389  Q
    ||||||||||||||||||||||||||| |||||||    
T  40842107 agagtagtgatatttgaacaaccatttgatacaac 40842073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 154480 - 154424
Alignment:
Q  348 ttaaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttt 405  Q
    |||| |||||||||||||||||||||||||| || | |||||| || |||||||||||    
T  154480 ttaacaaagagtagtgatatttgaacaaccaattaagacaactatt-gtgacaacttt 154424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 3650296 - 3650251
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaa 401  Q
    |||||||||||||| ||||||||||| | | |||||||||||||||    
T  3650296 gagtagtgatattttaacaaccatttgagataacttttggtgacaa 3650251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 7678914 - 7678847
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||| ||||||||||||||| |||| ||||||||||| || ||||||| ||| ||| ||||||||||||    
T  7678914 gagtaatgatatttgaacaactatttgatacaactttt-gtaacaacttcttttttc-tctcttttcatt 7678847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 529
Target Start/End: Original strand, 11223893 - 11223930
Alignment:
Q  492 gaagttgtcacaaaatggatacacaaatatcatttctc 529  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  11223893 gaagttgtcacaaaatggatgtacaaatatcatttctc 11223930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 531
Target Start/End: Original strand, 22706249 - 22706302
Alignment:
Q  478 tgagcatgatagatgaagttgtcacaaaatggatacacaaatatcatttctcat 531  Q
    |||| |||| |||| |||||||||| |||||||||  |||||||||||||||||    
T  22706249 tgagtatgagagataaagttgtcactaaatggatattcaaatatcatttctcat 22706302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 44103951 - 44103880
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct-tctcttttcatt 425  Q
    ||||||||||||||||||||||||||||| | | |||| || |||| ||||||||| |||| ||||||||||||    
T  44103951 aaagagtagtgatatttgaacaaccatttaagataactatt-gtgataactttttt-ttctctctcttttcatt 44103880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 19913968 - 19913899
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  19913968 agagtagtgatatttgaacaaccatttcatacaactttcggtgacaactttttttttc-tctcttttcatt 19913899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 34138925 - 34138993
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||    
T  34138925 gagtagtgatatttgaacaaccatttcatacaacttttggcgacaactttttt-ttcctctattttcatt 34138993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 26321584 - 26321653
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  26321584 aagagtagtgatatttgaacaatcatttcatacaacttttggtgataactttttt-ttc-tctcttttcatt 26321653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 7428606 - 7428558
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7428606 agtgatatttgaacaaccatttcatacaatttttggtgacaactttttt 7428558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 36133159 - 36133089
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||| ||||||||||||    
T  36133159 aaagagtagtgatatttgaacaactatttcatacaactttt-gtgacaacttcttttttc-tctcttttcatt 36133089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 45515494 - 45515555
Alignment:
Q  362 tgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  45515494 tgatatttgaacaaccatttcatacaacttttggtgacaacttcttt-ttc-tctcttttcatt 45515555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 33295975 - 33296043
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  33295975 agagtagtgatatttgaagaactatttcgtacaacttttggtgacaactttttt-ttc-tctcttttcatt 33296043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 359 - 425
Target Start/End: Complemental strand, 12600227 - 12600163
Alignment:
Q  359 tagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||| |||||||||||||||| |||||||||| ||| ||| ||||||||||||    
T  12600227 tagtgatatttgaacaactatttcatacaactttt-gtgacaacttcttttttc-tctcttttcatt 12600163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 3091926 - 3091856
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||  |||| ||||||||||| |||||||||| ||| ||| ||||||||||||    
T  3091926 aaagagtagtgatatttgaacaattatttgatacaactttt-gtgacaacttcttttttc-tctcttttcatt 3091856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 13711246 - 13711176
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||| ||||  |||||||||| |||||||||| ||| ||| ||||||||||||    
T  13711246 aaagagtagtgatatttgaacaactattttgtacaactttt-gtgacaacttcttttttc-tctcttttcatt 13711176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 9202406 - 9202457
Alignment:
Q  357 agtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||||||||||||||||||||||||||||| ||||  |||||| ||||||    
T  9202406 agtagtgatatttgaacaaccatttcatacaattttttatgacaattttttt 9202457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 11164264 - 11164332
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||| |||||||||||||||| |||| ||||||||||| |||||||||| ||| ||| ||||||||||||    
T  11164264 agagtggtgatatttgaacaactatttgatacaactttt-gtgacaacttcttttttc-tctcttttcatt 11164332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 12066095 - 12066024
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcat---acaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||| || ||   |||||||||||||||||||| ||| ||| ||||||||||||    
T  12066095 gagtagtgatatttgaacaaccaattgataccacaacttttggtgacaacttcttttttc-tctcttttcatt 12066024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 11229210 - 11229266
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||| | |||||||||||| ||||||| ||| ||||    
T  11229210 gagtagtgatatttgaacaaccattttagacaacttttggt-acaacttcttttttct 11229266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 15019036 - 15019089
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||| |  ||||||||| ||||||||||||| ||||    
T  15019036 agtgatatttgaacaaccatttgaggcaacttttgatgacaactttttttttct 15019089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 16577657 - 16577604
Alignment:
Q  348 ttaaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaa 401  Q
    |||| |||||||| ||||||||||| ||||||||||||||| |||| |||||||    
T  16577657 ttaataaagagtaatgatatttgaataaccatttcatacaattttttgtgacaa 16577604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 5455342 - 5455381
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttgg 395  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  5455342 gagtagtaatatttgaacaaccattttatacaacttttgg 5455381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 9760023 - 9760066
Alignment:
Q  362 tgatatttgaacaaccatttcatacaacttttggtgacaacttt 405  Q
    ||||||||||||||||||||  |||||||||| |||||||||||    
T  9760023 tgatatttgaacaaccattttttacaactttttgtgacaacttt 9760066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 618
Target Start/End: Complemental strand, 41405975 - 41405917
Alignment:
Q  560 gtaccccataacttggagttgtctcgtaccaggaaaatctaaaaagtatggtatttttg 618  Q
    ||||||||||||||| |||||| | ||||||| |||||||||  |||| ||||||||||    
T  41405975 gtaccccataacttgaagttgtgtggtaccagaaaaatctaaccagtagggtatttttg 41405917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 42283139 - 42283177
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  42283139 gagtagtgatatttgaacaaccatttcattcaatttttg 42283177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 36909732 - 36909780
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttt 405  Q
    ||||||||||||||| ||| |||||||||||||| |||| ||||||||||    
T  36909732 gagtagtgatatttgtacatccatttcatacaac-tttgatgacaacttt 36909780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 429
Target Start/End: Original strand, 45693356 - 45693428
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcattagtt 429  Q
    |||||||||||||| ||||||||||| | |||||||||  ||||| |||||||  || |||||||| |||||||    
T  45693356 gagtagtgatatttaaacaaccatttgagacaacttttaatgacagctttttttctc-tctctttttattagtt 45693428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 31249214 - 31249278
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  31249214 agtgatatttgaacaaccatttcatacaacttttggtgacaactttttt-tttttctcttttcatt 31249278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 43169642 - 43169695
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43169642 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 43169695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 51650542 - 51650469
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct-tctcttttcatt 425  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  51650542 aaagagtggtgatatttgaacaaccatttcatacaacttttggtgacaacttcttttttctctctcttttcatt 51650469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 108615 - 108560
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  108615 aaagagtagtgatatttgaacaactatttcatacaacttttggtgacaactttttt 108560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 6126638 - 6126569
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||    
T  6126638 agagtagtgatatttgaacaaccatttcatacaacttttggttacaacttcttttttc-tctcttttcatt 6126569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 51464153 - 51464207
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51464153 aagagtagtgatatttgaacaaccattttatacaacttttggtgacaactttttt 51464207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 5399098 - 5399046
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5399098 gagtagtgatatttgaacaaccatttcatccaacttttggtgacaactttttt 5399046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 46003889 - 46003841
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46003889 gagtaatgatatttgaacaaccatttcatacaacttttggtgacaactt 46003841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 51406257 - 51406311
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  51406257 aagagaagtgatatttgaacaactatttcatataacttttggtgacaactttttt 51406311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 352 - 425
Target Start/End: Original strand, 44365176 - 44365248
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||||||||| |||  || ||||||||||||    
T  44365176 aaaagagtggtgatatttgaacaaccattttatacaatttttggtgacaacttcttttctc-tctcttttcatt 44365248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 352 - 425
Target Start/End: Original strand, 55344180 - 55344252
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||| |||||||||||| |||  ||||||||||| | ||| ||||||||||||    
T  55344180 aaaagagtagtgatatttgaacaactatttcatacaacattttatgacaacttttcttttc-tctcttttcatt 55344252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 31997988 - 31997913
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcattagtt 429  Q
    ||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||  || |||||||| |||||||    
T  31997988 aaagagtagtgatatttgaacaaccatttgagacaacttttgatgacaacttcttttctc-tctctttttattagtt 31997913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 32687846 - 32687916
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||| ||||| ||| ||| ||||||||||||    
T  32687846 aagagtaatgatatttgaacaactatttgatacaacttttggtgataacttcttttttc-tctcttttcatt 32687916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 7231894 - 7231962
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||| || ||| ||| ||||||||||||    
T  7231894 agagtagtgatatttgaacaaccatttgatacaactttt-gtgacaatttattttttc-tctcttttcatt 7231962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 404
Target Start/End: Complemental strand, 41309176 - 41309134
Alignment:
Q  362 tgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  41309176 tgatatttgaacaatcatttcatacaacttttggtgacaactt 41309134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 425
Target Start/End: Complemental strand, 11173636 - 11173565
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||| | |||||||||||||||||| ||||||||||| |||||||||| ||| ||| ||||||||||||    
T  11173636 aaaagagtaataatatttgaacaaccatttgatacaactttt-gtgacaacttcttttttc-tctcttttcatt 11173565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 29706085 - 29706018
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||||||| ||| ||| ||||||||||||    
T  29706085 gagtagtgatatttgaacaactatttgatacaactttt-gtgacaacttcttttttc-tctcttttcatt 29706018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 36318168 - 36318217
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    |||||| |||||||||||||||||||||||| || |||||||||||||||    
T  36318168 agagtaatgatatttgaacaaccatttcatataatttttggtgacaactt 36318217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 20380776 - 20380834
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||| ||| ||||    
T  20380776 aagagtagtgatatttgaacaaccattttaaacaactttt-gtgacaacttcttttttct 20380834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 359 - 394
Target Start/End: Complemental strand, 44695191 - 44695156
Alignment:
Q  359 tagtgatatttgaacaaccatttcatacaacttttg 394  Q
    ||||||||||||||||||||||||||||||||||||    
T  44695191 tagtgatatttgaacaaccatttcatacaacttttg 44695156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 425
Target Start/End: Complemental strand, 46473312 - 46473243
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||| |||||||||||||||||||| |||||||||||  ||||||||| ||| ||| ||||||||||||    
T  46473312 aagagtaatgatatttgaacaaccatttgatacaactttt-atgacaacttcttttttc-tctcttttcatt 46473243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 25828857 - 25828804
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||||    
T  25828857 aagagtagtgatatttgaacaacca-ttcatacaatttttggtgataaccttttt 25828804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 28300535 - 28300602
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||| | |||||||| || |||||||||||| | ||| ||||||||||||    
T  28300535 gagtagtgatatttgaacaaccatatgatacaactctt-gtgacaacttttattttc-tctcttttcatt 28300602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 51673046 - 51673005
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggt 396  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  51673046 agagtagtgatatttgaacaaccattttagacaacttttggt 51673005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 20893131 - 20893179
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    |||||||||||||| ||||||||||| | |||||||||| |||||||||    
T  20893131 gagtagtgatattttaacaaccatttgagacaacttttgatgacaactt 20893179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 46953132 - 46953062
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt--ttttcttcttctcttttcat 424  Q
    |||||||||||||||||||||| |||| |||||||||||  |||||||||  |||| || ||||||||||||    
T  46953132 agagtagtgatatttgaacaactatttgatacaactttt-atgacaactttgttttttttttctcttttcat 46953062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 7293987 - 7294026
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  7293987 agagtagtgatatttgaacaaccattttagacaacttttg 7294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 618
Target Start/End: Complemental strand, 40025033 - 40024975
Alignment:
Q  560 gtaccccataacttggagttgtctcgtaccaggaaaatctaaaaagtatggtatttttg 618  Q
    |||||||  ||||||||||||| | ||||||| ||||||| ||||||| ||||||||||    
T  40025033 gtaccccgcaacttggagttgtgtggtaccagaaaaatcttaaaagtaaggtatttttg 40024975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 347 - 405
Target Start/End: Complemental strand, 51973447 - 51973390
Alignment:
Q  347 attaaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttt 405  Q
    |||||||||||| | ||||||||||||| ||||||  |||||||||| |||||||||||    
T  51973447 attaaaaaagagaaatgatatttgaacatccatttggtacaactttt-gtgacaacttt 51973390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 530
Target Start/End: Original strand, 2482709 - 2482746
Alignment:
Q  493 aagttgtcacaaaatggatacacaaatatcatttctca 530  Q
    |||||||||||||||||||  |||||||||||||||||    
T  2482709 aagttgtcacaaaatggatgtacaaatatcatttctca 2482746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 3483301 - 3483234
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||| ||||||||||| ||||| ||||||| | | |||||||||||||| ||| ||||||||||||    
T  3483301 gagtagtgttatttgaacaatcatttgatacaacatct-gtgacaactttttttttc-tctcttttcatt 3483234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 32154435 - 32154491
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32154435 aaaagggtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 32154491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 19426758 - 19426695
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  19426758 agtgatatttgaacaaccatttcatacaacttttggtgacaactttttt-ttc-tctcttttcatt 19426695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 7807240 - 7807189
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7807240 aaagagtagtgatatttgaacaaccatttcatacaacttttgatgacaactt 7807189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 12142066 - 12141999
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||    
T  12142066 gagtagtgatatttgaacaaccatttgatacaactttt-gtgacaactttttttttctt-tcttttcatt 12141999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 27778245 - 27778192
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  27778245 agagtagtgatatttgaacaaccatttcatataacttttggtgacaattttttt 27778192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 40717127 - 40717184
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||    
T  40717127 gagtagtgatatttgaacaaccatttcatacaactttttgtgacaacttcttttttct 40717184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 47424877 - 47424926
Alignment:
Q  359 tagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47424877 tagtgatatttgaacaaccatttcatacaacttttggtgacaattttttt 47424926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 351 - 428
Target Start/End: Original strand, 8792484 - 8792556
Alignment:
Q  351 aaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcattagt 428  Q
    |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||    |||||||||||||||    
T  8792484 aaaaagagtaatgatatttgaacaaccatttgatacaactttt-gtgacaacttttttc----tctcttttcattagt 8792556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 40842589 - 40842541
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40842589 gagtaatgatatttgaacaaccatttcatacaacttttggtgacaactt 40842541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 43260181 - 43260125
Alignment:
Q  348 ttaaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  43260181 ttaaagaagagtagtcatatttgaacaaccatttcatacaacttttgatgacaactt 43260125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 22330519 - 22330587
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||| |||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  22330519 agagcagtgatatttgaacaaccatttcatataatttttggtgacaactttttt-ttc-tctcttttcatt 22330587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 28597057 - 28596992
Alignment:
Q  361 gtgatatttgaacaaccatttcatacaacttttggtgacaactt-ttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||| ||  ||||||||||||    
T  28597057 gtgatatttgaacaaccatttcatacaacttttggtgacaaattcttttttttctctcttttcatt 28596992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 393
Target Start/End: Complemental strand, 43657186 - 43657147
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaactttt 393  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43657186 aagagtagtgatatttgaacaaccatttcatacaactttt 43657147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 404
Target Start/End: Original strand, 7390669 - 7390711
Alignment:
Q  362 tgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  7390669 tgatatttgaacaaccatttcatacaatttttggtgacaactt 7390711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 36990221 - 36990170
Alignment:
Q  357 agtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||||||||||||||||||||||||| || |||| ||||||| ||||||    
T  36990221 agtagtgatatttgaacaaccatttcatataattttttgtgacaaatttttt 36990170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 10591334 - 10591278
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||| ||| ||||    
T  10591334 gagtagtgatatttgaacaaccatttgagacaactttt-gtgacaacttcttttttct 10591278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 25887765 - 25887709
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||| | |||||||||||| ||||||| ||| ||||    
T  25887765 gagtagtgatatttgaacaaccattttagacaacttttggt-acaacttcttttttct 25887709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 155868 - 155908
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  155868 aagagtagtgatatttgaacaaccattttagacaacttttg 155908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 428
Target Start/End: Original strand, 48866815 - 48866889
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcattagt 428  Q
    ||||||||||||||||||||||| | |||| | ||||||||| |||||||| | ||| ||| |||||||||||||||    
T  48866815 aaaagagtagtgatatttgaacatctatttgaaacaactttt-gtgacaacctcttttttc-tctcttttcattagt 48866889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 393
Target Start/End: Original strand, 34348914 - 34348953
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaactttt 393  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  34348914 aagagtagtgatatttgaacatctatttcatacaactttt 34348953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 425
Target Start/End: Complemental strand, 46651860 - 46651787
Alignment:
Q  350 aaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||||||| | |||||| || | |||||||||| | | ||| ||||||||||||    
T  46651860 aaaaaagagtagtgatatttgaacaaccatatgatacaa-ttcttgtgacaacttctattttc-tctcttttcatt 46651787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 21858929 - 21858891
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  21858929 gagtagtgatatttgaacaaccattttaaacaacttttg 21858891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 394
Target Start/End: Complemental strand, 25192963 - 25192917
Alignment:
Q  348 ttaaaaaagagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    ||||||||||| | ||||||||||||||||||||  |||||||||||    
T  25192963 ttaaaaaagagaaatgatatttgaacaaccattttttacaacttttg 25192917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 493 - 531
Target Start/End: Complemental strand, 42663120 - 42663082
Alignment:
Q  493 aagttgtcacaaaatggatacacaaatatcatttctcat 531  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  42663120 aagttgtcacaaaatggatgtacaaatatcatttctcat 42663082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 5978761 - 5978694
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||| | |||||||| || |||||||||| | | ||| ||||||||||||    
T  5978761 gagtagtgatatttgaacaaccatatgatacaactctt-gtgacaacttctattttc-tctcttttcatt 5978694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 425
Target Start/End: Original strand, 12102610 - 12102665
Alignment:
Q  368 ttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||| ||||||||| |||||||||| ||| ||| ||||||||||||    
T  12102610 ttgaacaaccatttcagacaactttt-gtgacaacttattttttc-tctcttttcatt 12102665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 29355516 - 29355479
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaactt 391  Q
    |||||||||||||||||||||||||||| | |||||||    
T  29355516 aagagtagtgatatttgaacaaccatttaagacaactt 29355479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 394
Target Start/End: Complemental strand, 43445592 - 43445551
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    ||||||||||||||||||||||| ||||| |||||| |||||    
T  43445592 aaagagtagtgatatttgaacaatcatttgatacaatttttg 43445551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 40223674 - 40223729
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttctt 411  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40223674 gagtagtgatatttgaacaaccatttcatacaatttttggtgacaacttttttctt 40223729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 3141678 - 3141611
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  3141678 gagtagtgatatttgaacaaccatttcatacaacttttgatgacaactttttt-ttc-tctcttttcatt 3141611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 3634675 - 3634622
Alignment:
Q  357 agtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 410  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  3634675 agtagtgatatttgaacaaccattacatacaacttttgatgacaacttttttct 3634622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 6515326 - 6515379
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttt 407  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  6515326 aagagtagtgatatttgaacaaccatttcatacaactgttggtgacaatttttt 6515379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 10232682 - 10232614
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||| ||| ||| ||||||||||||    
T  10232682 gagtagtgatatttgaacaactattttatacaacttttggtgacaacttcttttttc-tctcttttcatt 10232614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 12661835 - 12661903
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  12661835 gagtggtgatatttgaacaactatttcatacaacttttggtgacaacttcttttttc-tctcttttcatt 12661903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 353 - 425
Target Start/End: Original strand, 13613849 - 13613920
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||| ||| ||||||||||||    
T  13613849 aaagaatagtgatatttgaacaatcatttcatacaacttttggtgacaatttcttttttc-tctcttttcatt 13613920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 5130264 - 5130334
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||| ||| ||||||||||||    
T  5130264 aagagtagtgatatttgaacaactatttcatacaattttttgtgacaacttcttttttc-tctcttttcatt 5130334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 560 - 618
Target Start/End: Complemental strand, 42831317 - 42831259
Alignment:
Q  560 gtaccccataacttggagttgtctcgtaccaggaaaatctaaaaagtatggtatttttg 618  Q
    |||||||| ||||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  42831317 gtaccccacaacttggagttgtttggtaccagaaaaatctaaaaagtatggtatttttg 42831259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 16202903 - 16202846
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||    
T  16202903 gagtagtgatatttgaacaatcatttcatacaacttttagtgacaacttcttttttct 16202846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 21749544 - 21749473
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||||| ||| || |||||||||||| || ||| ||| ||||||||||||    
T  21749544 aaagagtagtgatatttgaacaaccattttatataatttttggtgacaatttcttttttc-tctcttttcatt 21749473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 2117524 - 2117585
Alignment:
Q  351 aaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||| ||||    
T  2117524 aaaaagagtagtgatatttgaacaactatttgatacaactttt-gtgacaacttcttttttct 2117585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 9403701 - 9403648
Alignment:
Q  350 aaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  9403701 aaaaaagagtagtgatatttaaacaaccatttgatacaactttt-gtgacaactt 9403648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 14206568 - 14206504
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||||||| |||||||||||  ||||||  || ||||||||||||    
T  14206568 agtgatatttgaacaaccatttcatacaatttttggtgacagttttttttctc-tctcttttcatt 14206504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 39595456 - 39595389
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||| ||| ||| ||||||||||||    
T  39595456 gagtaatgatatttgaacaaccatttgatacaactttt-gtgacaacttcttttttc-tctcttttcatt 39595389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 425
Target Start/End: Complemental strand, 125273 - 125207
Alignment:
Q  357 agtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||||| ||||||||||| | |||||||| ||| ||| ||||||||||||    
T  125273 agtagtgatatttgaacaaccatttgatacaactttt-gcgacaacttcttttttc-tctcttttcatt 125207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 425
Target Start/End: Original strand, 33567125 - 33567195
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||| ||||||||||||| ||||||||||| ||||||| || ||| ||| ||||||||||||    
T  33567125 aaagagtagtgatatatgaacaaccatttgatacaactttt-gtgacaatttcttttttc-tctcttttcatt 33567195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 4434656 - 4434601
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    |||||| | ||||||||||||||  ||||||||||||||||||||||| |||||||    
T  4434656 aaagaggaatgatatttgaacaattatttcatacaacttttggtgacagctttttt 4434601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 11767877 - 11767935
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||||||| ||| ||||    
T  11767877 aagagtagtgatatttgaacaaccattttagacaacttttggt-acaacttcttttttct 11767935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 351 - 394
Target Start/End: Complemental strand, 19127311 - 19127268
Alignment:
Q  351 aaaaagagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  19127311 aaaaagagtagtgatatttgaacaaccattttaaacaacttttg 19127268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 11306879 - 11306811
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||| |||| ||||||||||| | |||||||| ||| ||| ||||||||||||    
T  11306879 agagtagtgatatttgaacaactatttgatacaactttt-gagacaacttcttttttc-tctcttttcatt 11306811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 394
Target Start/End: Original strand, 31284287 - 31284321
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaacttttg 394  Q
    |||||||||||||||||||||||||||||||||||    
T  31284287 agtgatatttgaacaaccatttcatacaacttttg 31284321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 425
Target Start/End: Original strand, 33243626 - 33243697
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||| |||||||||||||||||||||| | ||||||| ||||||| || ||| ||| ||||||||||||    
T  33243626 aaaagagtaatgatatttgaacaaccatttcagataactttt-gtgacaatttattttttc-tctcttttcatt 33243697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 20719902 - 20719971
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||| |||||| | ||||||||| |||||||||| |||  || ||||||||||||    
T  20719902 aagagtagtgatatttgaacatccatttgagacaactttt-gtgacaacttcttttctc-tctcttttcatt 20719971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 18449429 - 18449391
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaactt 391  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  18449429 aaagattagtgatatttgaagaaccatttcatacaactt 18449391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 27392590 - 27392658
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||| ||||||||||||||| | | ||||||||| |||||||||| ||| || |||||||||||||    
T  27392590 agagtagtgttatttgaacaaccatatgagacaactttt-gtgacaacttattt-tttttctcttttcatt 27392658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 381
Target Start/End: Complemental strand, 8897568 - 8897539
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccattt 381  Q
    ||||||||||||||||||||||||||||||    
T  8897568 aaaagagtagtgatatttgaacaaccattt 8897539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 12349966 - 12349929
Alignment:
Q  357 agtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  12349966 agtagtgatatttgaacaactatttgatacaacttttg 12349929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 12910952 - 12910919
Alignment:
Q  360 agtgatatttgaacaaccatttcatacaactttt 393  Q
    |||||||||| |||||||||||||||||||||||    
T  12910952 agtgatatttaaacaaccatttcatacaactttt 12910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 24431507 - 24431574
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||| | |||||| || ||||||||||  || ||| ||||||||||||    
T  24431507 gagtagtgatatttgaacaaccatttgagacaactatt-gtgacaacttcatttttc-tctcttttcatt 24431574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 529
Target Start/End: Original strand, 26660445 - 26660482
Alignment:
Q  492 gaagttgtcacaaaatggatacacaaatatcatttctc 529  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  26660445 gaagttgtcacaaaatggatgtacaaatatcatttctc 26660482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 529
Target Start/End: Original strand, 26932037 - 26932074
Alignment:
Q  492 gaagttgtcacaaaatggatacacaaatatcatttctc 529  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  26932037 gaagttgtcacaaaatggatgtacaaatatcatttctc 26932074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 42532302 - 42532246
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 410  Q
    ||||| |||||||||||||||||| |||||||| || |||| ||||||| ||||||||    
T  42532302 aaagattagtgatatttgaacaactatttcatataa-tttttgtgacaatttttttct 42532246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 42699231 - 42699194
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaactttt 393  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  42699231 gagtaatgatatttgaacaactatttcatacaactttt 42699194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 28548907 - 28548977
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||| || ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||    
T  28548907 aagagtaatgttatttgaacaaccattttatacaacttttggtgacaactttttt-tttttctcttttcatt 28548977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 352 - 425
Target Start/End: Complemental strand, 9954735 - 9954663
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||| || |||||  ||||||||||||    
T  9954735 aaaagaggagtgatatttgaacaaccatttaatacaacttttggtgacaac-ttcttctttctctcttttcatt 9954663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 25166808 - 25166753
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 410  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  25166808 agagtagtgatatttaaacaaccatttcatacaattttttgtgacaacttttttct 25166753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 2241710 - 2241765
Alignment:
Q  351 aaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttt 407  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  2241710 aaaaagaatagtgatatttgaacaaccatttgatacaactttt-gtgataacttttt 2241765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 10521307 - 10521253
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||||||||||||||||||| |||| ||| || ||||||||| |||||||||    
T  10521307 aagagtagtgatatttgaacaactattttatataatttttggtgataactttttt 10521253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 32253966 - 32253895
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct-tctcttttcatt 425  Q
    |||||||||||||||||||||||| ||||  |||||||||| ||||||| |||||| |||| ||||||||||||    
T  32253966 aaagagtagtgatatttgaacaactatttggtacaactttt-gtgacaa-tttttttttctctctcttttcatt 32253895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 24752412 - 24752357
Alignment:
Q  357 agtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||| ||| ||||    
T  24752412 agtagtgatatttgaacaaccattttagacaacttttggt-acaacttcttttttct 24752357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 381
Target Start/End: Complemental strand, 25554421 - 25554390
Alignment:
Q  350 aaaaaagagtagtgatatttgaacaaccattt 381  Q
    ||||||||||||||||||||||||||||||||    
T  25554421 aaaaaagagtagtgatatttgaacaaccattt 25554390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 26378273 - 26378312
Alignment:
Q  355 agagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  26378273 agagtagtgatatttgaacaaccattttagacaacttttg 26378312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 34021055 - 34021098
Alignment:
Q  350 aaaaaagagtagtgatatttgaacaaccatttcatacaactttt 393  Q
    ||||||||||||||||||||||||| |||||| | |||||||||    
T  34021055 aaaaaagagtagtgatatttgaacatccatttgagacaactttt 34021098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 24437628 - 24437574
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||| | |||||||||||||||||| ||| || ||||| |||||||||||||    
T  24437628 aagagtaattatatttgaacaaccatttgatataatttttgatgacaactttttt 24437574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 10628466 - 10628425
Alignment:
Q  352 aaaagagtagtgatatttgaacaaccatttcatacaactttt 393  Q
    ||||||| ||||||||||||||||| |||| |||||||||||    
T  10628466 aaaagaggagtgatatttgaacaactatttgatacaactttt 10628425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 25811917 - 25811861
Alignment:
Q  348 ttaaaaaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttt 405  Q
    ||||||| ||| | ||||||||||||||||||||  |||||||||| |||||||||||    
T  25811917 ttaaaaatgagaaatgatatttgaacaaccattttttacaactttt-gtgacaacttt 25811861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 30733191 - 30733135
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    |||||||||||||| ||||||||||| | ||||||||| ||||||| |||||| ||||    
T  30733191 gagtagtgatatttaaacaaccatttgagacaactttt-gtgacaatttttttgttct 30733135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 32853033 - 32853089
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttct 413  Q
    ||||||||||||||||||||| |||| |||||| |||| |||||||||| ||| ||||    
T  32853033 gagtagtgatatttgaacaactatttgatacaa-tttttgtgacaacttcttttttct 32853089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 6999 - 6945
Alignment:
Q  356 gagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttct 410  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  6999 gagtagtgatatttgaacaaccattttatacaacttttggcgacaacttttttct 6945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 354 - 425
Target Start/End: Complemental strand, 36186 - 36114
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt-ttttcttcttctcttttcatt 425  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| ||  ||||||||||||    
T  36186 aagagtagtgatatttgaacaaccatttgatacaactttttgtgacaacttgttttttttctctcttttcatt 36114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 396046 - 395992
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttt 408  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  396046 aagagtagtgatatttgaacaaccatttcatacaattttttgtgacaattttttt 395992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 27525 - 27477
Alignment:
Q  353 aaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaa 401  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  27525 aaagagtagtgatatttgaacaaccatttcatacaatttttagtgacaa 27477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 425
Target Start/End: Complemental strand, 18187 - 18119
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttcttcttctcttttcatt 425  Q
    ||||||||||||||||||||||| |||| |||||||||||  ||||||||||||| ||| ||||||||||||    
T  18187 aagagtagtgatatttgaacaactatttgatacaactttt-atgacaactttttt-ttc-tctcttttcatt 18119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 11419 - 11463
Alignment:
Q  350 aaaaaagagtagtgatatttgaacaaccatttcatacaacttttg 394  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||    
T  11419 aaaaaagagtagtgatatttgaacaactattttagacaacttttg 11463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 15076 - 15125
Alignment:
Q  354 aagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 404  Q
    ||||||||||||||||||||||| ||||  |||||||||| ||||||||||    
T  15076 aagagtagtgatatttgaacaactatttggtacaactttt-gtgacaactt 15125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 120023 - 119985
Alignment:
Q  348 ttaaaaaagagtagtgatatttgaacaaccatttcatac 386  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  120023 ttaaaaaagagtagtgatatttaaacaaccatttgatac 119985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 530
Target Start/End: Original strand, 223514 - 223551
Alignment:
Q  493 aagttgtcacaaaatggatacacaaatatcatttctca 530  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  223514 aagttgtcacaaaatggatattcaaatatcatttctca 223551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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