View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5637-Insertion-7 (Length: 453)

Name: NF5637-Insertion-7
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5637-Insertion-7
NF5637-Insertion-7
[»] chr4 (14 HSPs)
chr4 (18-453)||(38058559-38058994)
chr4 (18-453)||(38061460-38061895)
chr4 (8-453)||(38072887-38073338)
chr4 (68-453)||(38086397-38086788)
chr4 (64-453)||(38081972-38082355)
chr4 (106-216)||(38077992-38078103)
chr4 (78-183)||(37954488-37954593)
chr4 (291-453)||(37954221-37954383)
chr4 (381-451)||(38090795-38090865)
chr4 (374-451)||(36080187-36080264)
chr4 (405-451)||(38129582-38129628)
chr4 (405-442)||(38125638-38125675)
chr4 (387-451)||(34971530-34971594)
chr4 (387-451)||(36108051-36108115)
[»] chr6 (3 HSPs)
chr6 (308-443)||(7001406-7001541)
chr6 (226-337)||(10792936-10793050)
chr6 (405-444)||(10792884-10792923)
[»] chr1 (2 HSPs)
chr1 (226-337)||(34268585-34268699)
chr1 (405-444)||(34268712-34268751)
[»] chr2 (3 HSPs)
chr2 (365-442)||(11786982-11787059)
chr2 (387-451)||(8338676-8338740)
chr2 (405-453)||(11811316-11811364)


Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 38058994 - 38058559
Alignment:
Q  18 gttctgttgagcaacgtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaacca 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38058994 gttctgttgagcaacgtttcaagtggttcgtctttcggaaacccgtaaaggtaaagaactgattcaacccaactcatctcaacacaatcttctctaacca 38058895  T
Q  118 aaccaagctcaggaaacttctcttgcatcaagtgaatgagcttatctacacctccaagaaacaaggcttgaaatatagcttgtactgttgactttgactt 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38058894 aaccaagctcaggaaacttctcttgcatcaagtgtatgagcttatctactcctccaagaaacaaggcttgaaatatagcttgtactgttgattttgactt 38058795  T
Q  218 cccctttatacttgaatttactctttgtaagataacagtaatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgtt 317  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38058794 cccctttatacttgaatttaccctttgtaagataacagtaatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgtt 38058695  T
Q  318 gcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctc 417  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||    
T  38058694 gcattgtgttccaatgtttttggaacattgaagactgtcacaattgatggaacttgaacaagtttaatcttccatgaaattatgactccaaaacttgctc 38058595  T
Q  418 ctccaccacctctaatagcccaaaacaaatcttcac 453  Q
    ||||||||||||||||||||||||||||||||||||    
T  38058594 ctccaccacctctaatagcccaaaacaaatcttcac 38058559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 38061460 - 38061895
Alignment:
Q  18 gttctgttgagcaacgtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaacca 117  Q
    ||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  38061460 gttctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaatacaatcttctctaacca 38061559  T
Q  118 aaccaagctcaggaaacttctcttgcatcaagtgaatgagcttatctacacctccaagaaacaaggcttgaaatatagcttgtactgttgactttgactt 217  Q
    ||||||| || |||||||| |||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  38061560 aaccaagttctggaaacttttctttcatcaagggaatgagtttatctacacttccaagaaacaaggcttgaaataaagcttgtactgttgaatttgactt 38061659  T
Q  218 cccctttatacttgaatttactctttgtaagataacagtaatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgtt 317  Q
     || ||| ||||| ||||||| ||||| |||||||||  |||  ||| ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  38061660 accttttttacttaaatttaccctttgcaagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaacaagctttgtt 38061759  T
Q  318 gcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctc 417  Q
    |||||||| |||||||||||||| ||||| || |||| |||| ||||||||||| |||||||||||| ||||||||||| |||||| |||||||||||||    
T  38061760 gcattttgatccaatgtttttggcacattgaacactgacacacttgatggaacttgaacaagtttaaccttccatgaaattatgactccaaaacttgctc 38061859  T
Q  418 ctccaccacctctaatagcccaaaacaaatcttcac 453  Q
    ||||||| ||||||||||||||||| ||||| ||||    
T  38061860 ctccacctcctctaatagcccaaaaaaaatcctcac 38061895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 453
Target Start/End: Complemental strand, 38073338 - 38072887
Alignment:
Q  8 tgcacctagagttctgttgagcaacgtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatct 107  Q
    |||| |||| ||||||||||||||||||||||||| |||| |||  ||||||| | ||||||||||||| ||||||| ||||||||| ||||||||||||    
T  38073338 tgcagctagtgttctgttgagcaacgtttcaagtggttcgccttctggaaaccgaaaaaggtaaagaactgattcaatccaactcatttcaacacaatct 38073239  T
Q  108 tctctaaccaaaccaagctcaggaaacttctcttgcatcaagtgaatgagcttatctacacctccaagaaacaaggcttgaaatatagcttgtactgttg 207  Q
    ||||||||||||||||| ||||||||||| |||| ||||||| | | ||| |||||||||| ||| |||||||||| |||||||| |||| |||||||||    
T  38073238 tctctaaccaaaccaagttcaggaaacttttcttccatcaagggtaagaggttatctacacttcctagaaacaaggattgaaataaagctagtactgttg 38073139  T
Q  208 actttgacttcccctttatacttgaattta---ct---ctttgtaagataacagtaatttctaagttttcatcaattctacttgtcaaaaactgccactt 301  Q
    |||||| ||  || | | ||||||||||||   ||   ||||| ||||||| | ||||  |||||||||| |||| | ||   |  | ||||||||||||    
T  38073138 actttggctcaccttgtttacttgaatttaaatctagcctttgcaagataatattaatggctaagttttcttcaagtttatgagctacaaactgccactt 38073039  T
Q  302 gtgaataagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatg 401  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||| || || ||| ||||||||||| |||||||||||||||||||||||||||||    
T  38073038 gtgaacaagctttgttgcattttgttccaatgttcttggaacagtaaacaccgttacagttgatggaacttgaacaagtttaatcttccatgaaactatg 38072939  T
Q  402 acaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcac 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38072938 acaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcac 38072887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 68 - 453
Target Start/End: Complemental strand, 38086788 - 38086397
Alignment:
Q  68 gtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcaggaaacttctcttgcatcaagtgaatgagcttatctaca 167  Q
    ||||||||| ||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| | |||| | ||||| |||||||||    
T  38086788 gtaaagaacagattcaatccaactcatttcaatacaatattctctaaccaaaccaagctcaggaaacttctcttgaaccaagggtatgagtttatctaca 38086689  T
Q  168 cctccaagaaacaaggcttgaaatatagcttgtactgttgactttgacttcccctttatacttgaattta------ctctttgtaagataacagtaattt 261  Q
    |||||||||||||| |||||||||| | || |||| | |||||||||||  || ||| ||||||||||||      | |||||  ||| || | | ||      
T  38086688 cctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttgaatttaaatttaccctttgccagacaatattcatgg 38086589  T
Q  262 ctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaat 361  Q
    |||  |||||||||| | |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  38086588 ctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttttggaacagtaaacactgtcacaat 38086489  T
Q  362 tgatggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcac 453  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  38086488 tgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcac 38086397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 64 - 453
Target Start/End: Complemental strand, 38082355 - 38081972
Alignment:
Q  64 aaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcaggaaacttctcttgcatcaagtgaatgagcttatc 163  Q
    ||||||||||||||||||||| ||||||||| |||| ||||| |||||| |||| ||| | |||||||||||| |  | ||||||| ||||||| |||||    
T  38082355 aaaggtaaagaaccgattcaatccaactcatttcaatacaattttctctgaccacacccaactcaggaaacttttgatccatcaagggaatgagtttatc 38082256  T
Q  164 tacacctccaagaaacaaggcttgaaatatagcttgtactgttgactttgacttcccctttatacttgaatttactctttgtaagataacagtaatttct 263  Q
    |||||||||||||||||||||||||||||||||| | | ||||| ||        || ||| ||||||||||||  ||||| |||| || | | ||  ||    
T  38082255 tacacctccaagaaacaaggcttgaaatatagctagaattgttgtctcg------ccttttttacttgaatttatcctttgaaagacaatattgatggct 38082162  T
Q  264 aagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattg 363  Q
    | ||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||||||||||||| | |||||||  |||| || |||||  |||    
T  38082161 atgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatgctcttggaactgtaaacaccgtcactgttg 38082062  T
Q  364 atggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcac 453  Q
     |||||||  ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  38082061 ctggaacttcaacaagttttatcttccatgaaattatgactccaaaacttgctcctccaccacctctaatagcccaaaaataatcttcac 38081972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 38078103 - 38077992
Alignment:
Q  106 cttctctaaccaaaccaagctcaggaaacttctcttgcatcaagtgaatgagcttatctacacctcc-aagaaacaaggcttgaaatatagcttgtactg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||| || ||||||||||| ||||| |||| ||||||    
T  38078103 cttctctaaccaaaccaagctcaggaaacttctcttgcatcaagggcatgagttcatctacacctccaaaaaaacaaggcttaaaataaagctagtactg 38078004  T
Q  205 ttgactttgact 216  Q
    ||||||||||||    
T  38078003 ttgactttgact 38077992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 37954593 - 37954488
Alignment:
Q  78 gattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcaggaaacttctcttgcatcaagtgaatgagcttatctacacctccaagaa 177  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||||| ||||||| ||||| ||||||| | || ||   |||||||||||||||||    
T  37954593 gattcaatccaactcatctcagtacaatcttctctaaccaaaccaagctctggaaactcctcttccatcaaggggataagtccatctacacctccaagaa 37954494  T
Q  178 acaagg 183  Q
    ||||||    
T  37954493 acaagg 37954488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 453
Target Start/End: Complemental strand, 37954383 - 37954221
Alignment:
Q  291 aactgccacttgtgaataagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttcc 390  Q
    ||||||||||| ||||||||||| ||||| || ||||||| |||  | | |||  | || | ||||||| ||||||||||  |||| ||||| | |||||    
T  37954383 aactgccacttctgaataagcttggttgcgttatgttccagtgtcctagaaactctgaatattgtcacagttgatggaacatgaactagttttaccttcc 37954284  T
Q  391 atgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcac 453  Q
    |||  |  || || ||||| |||||||||||||| ||||||||||||||||||| ||| ||||    
T  37954283 atgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcac 37954221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 38090865 - 38090795
Alignment:
Q  381 ttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 451  Q
    ||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||| | ||||||    
T  38090865 ttaatcttccaagaaacaataacaccaaaactagctccaccaccacctctaatagcccaaaaaacatcttc 38090795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 451
Target Start/End: Complemental strand, 36080264 - 36080187
Alignment:
Q  374 aacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 451  Q
    |||||||||||||||||||  ||  ||||||||||||||||| || |||||||| || ||||||||||| ||||||||    
T  36080264 aacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaataaatcttc 36080187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 451
Target Start/End: Complemental strand, 38129628 - 38129582
Alignment:
Q  405 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 451  Q
    |||||||||||||||||||| ||||||||||||||||| | ||||||    
T  38129628 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttc 38129582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 38125675 - 38125638
Alignment:
Q  405 ccaaaacttgctcctccaccacctctaatagcccaaaa 442  Q
    |||||||||||||||||||| |||||||||||||||||    
T  38125675 ccaaaacttgctcctccacctcctctaatagcccaaaa 38125638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 451
Target Start/End: Original strand, 34971530 - 34971594
Alignment:
Q  387 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 451  Q
    ||||||||||  || ||||||||||| || || ||||||||||| ||||||||||| | ||||||    
T  34971530 ttccatgaaagaataacaccaaaactagcaccaccaccacctctgatagcccaaaagagatcttc 34971594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 451
Target Start/End: Complemental strand, 36108115 - 36108051
Alignment:
Q  387 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 451  Q
    ||||||||||  || ||||||||||| || || ||||||||||| ||||||||||| | ||||||    
T  36108115 ttccatgaaagaataacaccaaaactagcaccaccaccacctcttatagcccaaaaaagatcttc 36108051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 308 - 443
Target Start/End: Original strand, 7001406 - 7001541
Alignment:
Q  308 aagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacacca 407  Q
    |||||||||||||||||| |||||||||||||| | ||| || ||||||| | || ||||||||  || |||||||||||||||||||| |||||| |||    
T  7001406 aagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcatactttatggaactttaataagtttaatcttccatgaaattatgactcca 7001505  T
Q  408 aaacttgctcctccaccacctctaatagcccaaaac 443  Q
    ||||||||||||||| ||||||||||||| ||||||    
T  7001506 aaacttgctcctccagcacctctaatagctcaaaac 7001541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 337
Target Start/End: Complemental strand, 10793050 - 10792936
Alignment:
Q  226 tacttgaatttactctttgtaagataacag---taatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcatt 322  Q
    ||||||||||||| ||| | |||||||||    ||||  ||| |||| |||||||| ||||||||| || |||||| ||||||| ||| |||||||||||    
T  10793050 tacttgaatttacccttagcaagataacataattaatggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgttgcatt 10792951  T
Q  323 ttgttccaatgtttt 337  Q
    ||| |||||||||||    
T  10792950 ttgatccaatgtttt 10792936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 444
Target Start/End: Complemental strand, 10792923 - 10792884
Alignment:
Q  405 ccaaaacttgctcctccaccacctctaatagcccaaaaca 444  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  10792923 ccaaaacttgctcctccacctcctctaatagctcaaaaca 10792884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 337
Target Start/End: Original strand, 34268585 - 34268699
Alignment:
Q  226 tacttgaatttactctttgtaagataacag---taatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcatt 322  Q
    ||||||||||||| ||| | |||||||||    ||||  ||| |||| |||||||| ||||||||| || |||||| ||||||| ||| |||||||||||    
T  34268585 tacttgaatttacccttagcaagataacataattaatggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgttgcatt 34268684  T
Q  323 ttgttccaatgtttt 337  Q
    ||| |||||||||||    
T  34268685 ttgatccaatgtttt 34268699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 444
Target Start/End: Original strand, 34268712 - 34268751
Alignment:
Q  405 ccaaaacttgctcctccaccacctctaatagcccaaaaca 444  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  34268712 ccaaaacttgctcctccacctcctctaatagctcaaaaca 34268751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 11786982 - 11787059
Alignment:
Q  365 tggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaa 442  Q
    |||||| ||||||||||| ||||||||  |||  |  | |||||||||| | ||||||||||||||||||||||||||    
T  11786982 tggaacaggaacaagttttatcttccaccaaagaagaataccaaaacttccacctccaccacctctaatagcccaaaa 11787059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 451
Target Start/End: Complemental strand, 8338740 - 8338676
Alignment:
Q  387 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 451  Q
    ||||||||||  || ||||||||||| || || |||||||| |||||||||||||||| ||||||    
T  8338740 ttccatgaaagaataacaccaaaactagcaccaccaccacccctaatagcccaaaacagatcttc 8338676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 11811316 - 11811364
Alignment:
Q  405 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcac 453  Q
    ||||| |||| ||||||||| ||||| ||||||||||| ||||||||||    
T  11811316 ccaaagcttgatcctccacctcctcttatagcccaaaataaatcttcac 11811364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University