View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5637-Insertion-8 (Length: 423)
Name: NF5637-Insertion-8
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5637-Insertion-8 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 7 - 423
Target Start/End: Original strand, 35203868 - 35204278
Alignment:
| Q |
7 |
actcatcacgtcatctgcatttaagaatcaaaatccacaatatcattaaccttaccttaacctcataaaattagttcccagaccagaatgttctcacagc |
106 |
Q |
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| T |
35203868 |
actcatcacttcatctgcatttaagaatcaaaatccacaatatcattaaccttaccttaacctcataaaattagttcccagaccagaatgttctcacagc |
35203967 |
T |
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| Q |
107 |
atgaaataaattagtctaacttcaagccattacaccaaactttaattctcttaagcttccaatttgagtattacatttgatattgctacaccaagtatga |
206 |
Q |
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| T |
35203968 |
atgaaataaattagtctaacttcaagccattacaccaaactttaattctcttaagcttccaatttgagtattacatttgatattgctacaccaaatatga |
35204067 |
T |
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| Q |
207 |
caagtgtaaattaatattatggacaagtaaatgtgcatcattgaggtttaagacaacaaccgtcaacactgtaaagcttatttagctagtatcaccttca |
306 |
Q |
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| T |
35204068 |
caagtgtaa------attatggacaagtaaatgtgcgtcattgaggtttaagacaacaaccgtcaacactgtaaagcttatttagctagtatcaccttca |
35204161 |
T |
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| Q |
307 |
ctacgataggaaacttgaatgcaatagtacaccaagtcctacaaatcaattactccatcgattatgattatgcatttttaacttactataaaacacactt |
406 |
Q |
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| T |
35204162 |
ctacgataggaaacttgaatgcaatagtacaccaagtcctacaaatcaattactccatcgattatgattatgcatttttaacttactataaaacacactt |
35204261 |
T |
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| Q |
407 |
agaactagttttcacaa |
423 |
Q |
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| T |
35204262 |
agaactagttttcacaa |
35204278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 21217518 - 21217608
Alignment:
| Q |
88 |
accagaatgttctcacagcatgaaataaattagtctaacttcaagccattacaccaaactttaattctcttaagcttccaatttgagtatta |
179 |
Q |
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| T |
21217518 |
accagaatgttctaacagcataaaatgaattattccaaattcaagccattatgccgaa-ttttactctcttaagctttcaatttgagtatta |
21217608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 20457616 - 20457560
Alignment:
| Q |
367 |
attatgattatgcatttttaacttactataaaacacacttagaactagttttcacaa |
423 |
Q |
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| T |
20457616 |
attatggttatacatttttaacttgctattaaacatgctcagaactagttttcacaa |
20457560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 380 - 422
Target Start/End: Original strand, 31441502 - 31441544
Alignment:
| Q |
380 |
atttttaacttactataaaacacacttagaactagttttcaca |
422 |
Q |
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| T |
31441502 |
atttttaacttactataaaacacacttagaactggttttcaca |
31441544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 4649 - 4599
Alignment:
| Q |
88 |
accagaatgttctcacagcatgaaataaattagtctaacttcaagccatta |
138 |
Q |
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| T |
4649 |
accagaatgttctaatcgcatgaaataaattagtctaacttaaagctatta |
4599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 2912110 - 2912046
Alignment:
| Q |
251 |
ggtttaagacaacaaccgtcaacactgtaaagcttatttagctagtatcaccttcactacgatag |
315 |
Q |
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| T |
2912110 |
ggtttaaggcatcaacagccaacactgagaagcttatttaactagtatcacctccactaagatag |
2912046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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